View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_40 (Length: 364)
Name: NF11851_high_40
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 349
Target Start/End: Original strand, 43477118 - 43477475
Alignment:
| Q |
7 |
gcaaaggtgataatcaataatatgcatctttatccaaatttcagataaaagcatagtattgtccaaaaagatttgataaaaaagccaaaagaaatacaag |
106 |
Q |
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| T |
43477118 |
gcaagggtgataatcaataatatgcatctttatccaaatttcagataaaagcatagtattgtccaaaaagatttgataaaaaagccaaaagaaatacaag |
43477217 |
T |
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| Q |
107 |
gtaggtctgcgtggcttaatgattattgagctggtaaacttttgctcaatctaatagtcatactcataactaaaacaaaatccgt-----------ttaa |
195 |
Q |
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| T |
43477218 |
gtaggtctgcgtggcttaatgattattgagctggtaaacttttgctcaatctaatagtcatactcataactaaaacaaaatccgttaaaaaaaaacttaa |
43477317 |
T |
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| Q |
196 |
ttataatgaacaatctcatgtattttccactaactaacaactaagacattcttttcttttcaaaaaacaaagacattcttaacgaagggttaacctagat |
295 |
Q |
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| T |
43477318 |
ttataatgaacaatctcatgtattttccactaactaacaactaagacattcttttcttttcaaaaaacaaagacattcttaacgaagggttaacctagat |
43477417 |
T |
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| Q |
296 |
tctgaagacaaatagaatcattattgtatg----ataagaaagcgattatgacaaaat |
349 |
Q |
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| T |
43477418 |
tctgaagacaaatagaatcattattgtatggtaattaagaaagcgattatgacaaaat |
43477475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 43468316 - 43468363
Alignment:
| Q |
261 |
aacaaagacattcttaacgaagggttaacctagattctgaagacaaat |
308 |
Q |
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| T |
43468316 |
aacacagacattcttaaagaagggttaacctaggttctgaagacaaat |
43468363 |
T |
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