View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11851_high_43 (Length: 355)
Name: NF11851_high_43
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 1355332 - 1355679
Alignment:
| Q |
1 |
attggtggaaaagggagtggctgtcgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtg |
100 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355332 |
attggtggaaaaggaagtggctgttgaagtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtg |
1355431 |
T |
|
| Q |
101 |
gatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355432 |
gatgaggaaggaagtagtttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctg |
1355531 |
T |
|
| Q |
201 |
ctctttacaagtatagggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355532 |
ctctttacaagtatagggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattg |
1355631 |
T |
|
| Q |
301 |
tgatttttgttttgcaataaaaggttttattttagtttccttcttctc |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1355632 |
tgatttttgttttgcaataaaaggttttattttagtttccttcttctc |
1355679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 1362218 - 1362465
Alignment:
| Q |
1 |
attggtggaaaagggagtggctgtcgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1362218 |
attggtggaaaagggagtggctgttgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtg |
1362317 |
T |
|
| Q |
101 |
gatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||| |
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|
| T |
1362318 |
gatgaggaaggaagtagtttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattcataatcaatatattgatgatctcattgctg |
1362417 |
T |
|
| Q |
201 |
ctctttacaagtatagggttccttccaattccaacaactaagtagact |
248 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
1362418 |
ctctttacaagtataggaatccttccaattccaacaactaggtagact |
1362465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 20493028 - 20493182
Alignment:
| Q |
26 |
gaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcagga |
125 |
Q |
| |
|
||||||||||||| |||| |||||||||| ||||||||||||||| | || | |||||||||||||||| ||||||||||||||||||| | || | |
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|
| T |
20493028 |
gaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctatagaa |
20493127 |
T |
|
| Q |
126 |
acaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
180 |
Q |
| |
|
| ||||| ||||| |||| ||| ||||| ||||||||||| |||||||| |||| |
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|
| T |
20493128 |
aaaatgccaaagatatgggaaagattttcggttcaaaagatcttcacaatgaata |
20493182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 11532196 - 11532409
Alignment:
| Q |
16 |
agtggctgtcgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagt |
115 |
Q |
| |
|
||||||| | |||||||||||||||||| |||| ||||| |||||||||||||| || || | |||||||||||| ||| ||||||||||||||||| |
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|
| T |
11532196 |
agtggctattgaggtaccaaggagtgagaaagacgggtcctttactagggactcagtagccaaaacattgaggttggtaataatggatgaggaaggaagt |
11532295 |
T |
|
| Q |
116 |
agtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtata |
215 |
Q |
| |
|
| | ||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||||| ||||||| | ||||||| |
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|
| T |
11532296 |
acgtacagaaacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaatacattgaagattttattgttgctcttcaaaagtata |
11532395 |
T |
|
| Q |
216 |
gggttccttccaat |
229 |
Q |
| |
|
| |||| ||||||| |
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|
| T |
11532396 |
gagttcattccaat |
11532409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 29954893 - 29955088
Alignment:
| Q |
26 |
gaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagta-gtttcagg |
124 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||| | || || |||||||||||||||| ||||||||||||||||||| || || || |
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|
| T |
29954893 |
gaggtaccaaggagtgagcaagatgggtcctttactagggactcgatagcccaaacattgaggttggcaatagtggatgaggaaggaagtatgtatc-gg |
29954991 |
T |
|
| Q |
125 |
aacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
221 |
Q |
| |
|
|| ||||| ||||| ||| ||||||||||||||||||||| |||||||| |||| ||| | || | |||||||||||| | |||||||| |||| |
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|
| T |
29954992 |
aataatgccaaagatatggaaaaggttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctcttcaaaagtatagagttc |
29955088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 51369570 - 51369360
Alignment:
| Q |
16 |
agtggctgtcgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagt |
115 |
Q |
| |
|
||||||||| || ||||||||||||||| |||||||||| ||||||||||||||||| || | |||||||||||| ||| |||||||||||||| || |
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|
| T |
51369570 |
agtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagc |
51369471 |
T |
|
| Q |
116 |
agtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtata |
215 |
Q |
| |
|
| | |||||| ||||| ||||| |||| || ||||||||||||||||| ||||||||||||| ||| | || || || ||||||||| | ||| ||| |
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|
| T |
51369470 |
acgtgcaggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcata |
51369371 |
T |
|
| Q |
216 |
gggttccttcc |
226 |
Q |
| |
|
| |||| |||| |
|
|
| T |
51369370 |
gagttcattcc |
51369360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 12846871 - 12847066
Alignment:
| Q |
26 |
gaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcagga |
125 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||||||||||| ||| || | |||||||||| ||||| |||||| ||||||| || || ||||| |
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|
| T |
12846871 |
gaggttccaagaagtgaggaggatgggtcctttactagggactttgtagccctaacattgaggttagcaataatggatgccgaaggaattatttacagga |
12846970 |
T |
|
| Q |
126 |
acaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
221 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||||| ||||||| |||| ||||| || || |||||||||||| | ||||||||||||| |
|
|
| T |
12846971 |
acaatgcaaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttcaaaagtatagggttc |
12847066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 14589306 - 14589470
Alignment:
| Q |
16 |
agtggctgtcgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagt |
115 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| | ||| |||||||| ||| ||| | |||||||||||| ||| |||||||||||||||||| |
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|
| T |
14589306 |
agtggctgttgaggtaccaaggagtgagccagatggggccattaatagggactgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagt |
14589405 |
T |
|
| Q |
116 |
agtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
180 |
Q |
| |
|
| || |||||||||||| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
|
|
| T |
14589406 |
atttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14589470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 14622964 - 14623128
Alignment:
| Q |
16 |
agtggctgtcgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagt |
115 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| | ||| |||||||| ||| ||| | |||||||||||| ||| |||||||||||||||||| |
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|
| T |
14622964 |
agtggctgttgaggtaccaaggagtgagccagatggggccattaatagggactgtgttgctaaaacattgaggttggtaatagtggatgaggaaggaagt |
14623063 |
T |
|
| Q |
116 |
agtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
180 |
Q |
| |
|
| || |||||||||||| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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|
| T |
14623064 |
atttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14623128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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