View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11851_high_48 (Length: 327)

Name: NF11851_high_48
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11851_high_48
NF11851_high_48
[»] chr1 (18 HSPs)
chr1 (113-313)||(27781845-27782038)
chr1 (101-140)||(17699892-17699931)
chr1 (259-301)||(17699998-17700040)
chr1 (1-35)||(6710961-6710995)
chr1 (1-35)||(9974702-9974736)
chr1 (1-35)||(18782336-18782370)
chr1 (1-35)||(19315798-19315832)
chr1 (1-35)||(38473873-38473907)
chr1 (1-35)||(44978717-44978751)
chr1 (1-35)||(46051608-46051642)
chr1 (1-35)||(50099080-50099114)
chr1 (1-35)||(52146882-52146916)
chr1 (1-34)||(33194869-33194902)
chr1 (1-34)||(36781390-36781423)
chr1 (3-35)||(9878733-9878765)
chr1 (3-35)||(45670435-45670467)
chr1 (3-35)||(46051339-46051371)
chr1 (3-35)||(49594911-49594943)
[»] chr8 (12 HSPs)
chr8 (1-35)||(38633951-38633985)
chr8 (1-34)||(33651999-33652032)
chr8 (1-35)||(12010710-12010744)
chr8 (1-35)||(24193530-24193564)
chr8 (1-35)||(29485176-29485210)
chr8 (1-35)||(35443170-35443204)
chr8 (1-35)||(35443469-35443503)
chr8 (1-35)||(41536476-41536510)
chr8 (1-34)||(38633660-38633693)
chr8 (3-35)||(23935122-23935154)
chr8 (50-82)||(24430868-24430900)
chr8 (3-35)||(33651701-33651733)
[»] chr7 (17 HSPs)
chr7 (1-35)||(31793866-31793900)
chr7 (1-35)||(2960589-2960623)
chr7 (1-35)||(8162959-8162993)
chr7 (1-35)||(11050210-11050244)
chr7 (1-35)||(11476505-11476539)
chr7 (1-35)||(30876417-30876451)
chr7 (1-35)||(30972159-30972193)
chr7 (1-35)||(31684083-31684117)
chr7 (1-35)||(31684352-31684386)
chr7 (1-35)||(37393947-37393981)
chr7 (1-35)||(37394244-37394278)
chr7 (1-35)||(43968477-43968511)
chr7 (1-35)||(44800657-44800691)
chr7 (1-35)||(47119880-47119914)
chr7 (1-34)||(35600369-35600402)
chr7 (1-33)||(1469711-1469743)
chr7 (50-82)||(47281422-47281454)
[»] chr6 (9 HSPs)
chr6 (1-35)||(30378877-30378911)
chr6 (1-35)||(1077094-1077128)
chr6 (1-35)||(3258756-3258790)
chr6 (1-35)||(12626496-12626530)
chr6 (1-35)||(12626794-12626828)
chr6 (1-35)||(17942898-17942932)
chr6 (1-35)||(17943194-17943228)
chr6 (1-35)||(29050430-29050464)
chr6 (1-35)||(30379175-30379209)
[»] chr3 (16 HSPs)
chr3 (1-35)||(21656378-21656412)
chr3 (1-34)||(21890032-21890065)
chr3 (1-34)||(38923948-38923981)
chr3 (1-35)||(3697006-3697040)
chr3 (1-35)||(19268685-19268719)
chr3 (1-35)||(19664401-19664435)
chr3 (1-35)||(20813688-20813722)
chr3 (1-35)||(21564654-21564688)
chr3 (1-35)||(21656676-21656710)
chr3 (1-35)||(28699823-28699857)
chr3 (1-35)||(36315219-36315253)
chr3 (1-35)||(47329421-47329455)
chr3 (1-34)||(10618698-10618731)
chr3 (1-34)||(35346421-35346454)
chr3 (1-34)||(40922115-40922148)
chr3 (1-30)||(45380507-45380536)
[»] chr2 (19 HSPs)
chr2 (1-35)||(1106806-1106840)
chr2 (1-35)||(31187389-31187423)
chr2 (1-35)||(31195449-31195483)
chr2 (1-35)||(771925-771959)
chr2 (5-35)||(2057088-2057118)
chr2 (1-35)||(7297479-7297513)
chr2 (1-35)||(7378823-7378857)
chr2 (1-35)||(12759996-12760030)
chr2 (1-35)||(17484499-17484533)
chr2 (50-84)||(27328791-27328825)
chr2 (1-35)||(41500740-41500774)
chr2 (1-35)||(42629845-42629879)
chr2 (50-83)||(2057132-2057165)
chr2 (1-34)||(38751206-38751239)
chr2 (2-35)||(40854768-40854801)
chr2 (1-33)||(19916204-19916236)
chr2 (50-82)||(23671714-23671746)
chr2 (50-82)||(37654301-37654333)
chr2 (1-33)||(38750910-38750942)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-34)||(219044-219077)
[»] chr5 (15 HSPs)
chr5 (1-34)||(39002212-39002245)
chr5 (1-35)||(6600383-6600417)
chr5 (1-35)||(6740202-6740236)
chr5 (1-35)||(14952213-14952247)
chr5 (1-35)||(17002403-17002437)
chr5 (1-35)||(20408393-20408427)
chr5 (1-35)||(27116341-27116375)
chr5 (1-35)||(28078354-28078388)
chr5 (1-35)||(28078652-28078686)
chr5 (1-35)||(31710142-31710176)
chr5 (1-35)||(42993378-42993412)
chr5 (1-34)||(6600086-6600119)
chr5 (1-34)||(20079504-20079537)
chr5 (1-34)||(27116049-27116082)
chr5 (3-35)||(14717465-14717497)
[»] scaffold0693 (1 HSPs)
scaffold0693 (1-35)||(5274-5308)
[»] scaffold0542 (2 HSPs)
scaffold0542 (1-35)||(1942-1976)
scaffold0542 (1-34)||(2191-2224)
[»] chr4 (8 HSPs)
chr4 (1-35)||(2055145-2055179)
chr4 (1-35)||(10588738-10588772)
chr4 (1-35)||(11795103-11795137)
chr4 (1-35)||(15985168-15985202)
chr4 (1-35)||(28812533-28812567)
chr4 (1-35)||(32118574-32118608)
chr4 (1-34)||(8881963-8881996)
chr4 (1-34)||(9800397-9800430)
[»] scaffold0117 (1 HSPs)
scaffold0117 (50-82)||(14491-14523)


Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 113 - 313
Target Start/End: Original strand, 27781845 - 27782038
Alignment:
Q  113 gtagactccaccactgaaagttccaaacaaaatatagtgatgctaatggaaagattaaatcctttacattcaactccattaaataatagaccaattatta 212  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | |  ||||||||    
T  27781845 gtagacttcaccactgaaagttccaaacaaaaaatagtgatgctaatggtaagat-aaatcctttacgttcaactccattaaataaaacaataattatta 27781943  T
Q  213 taacataactatataggacaggtaaccttaaccgtgatatttttgatacatattttccacatgaagccactctttgagagtaaactcattactcatctag 312  Q
    ||||||||||| | |||| |||||||||||||| |  ||||| |||| |||||||||||||| |||||||||      ||||||||||||||||||||||    
T  27781944 taacataactaaacaggataggtaaccttaaccatcgtatttatgatgcatattttccacatcaagccactc------agtaaactcattactcatctag 27782037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 17699892 - 17699931
Alignment:
Q  101 ttattcacaaaagtagactccaccactgaaagttccaaac 140  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  17699892 ttattcacaaaagtagattccaccactgaaagttccaaac 17699931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 17699998 - 17700040
Alignment:
Q  259 tacatattttccacatgaagccactctttgagagtaaactcat 301  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  17699998 tacatattttccacattaagccactctttgacagtaaactcat 17700040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6710995 - 6710961
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  6710995 tgtttgggacttttgaaacttaaaggaccactttg 6710961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9974736 - 9974702
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  9974736 tgtttgggacttttgaaacttaaaggaccactttg 9974702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18782336 - 18782370
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  18782336 tgtttgggacttttgaaacttaaatgaccactttg 18782370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19315798 - 19315832
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  19315798 tgtttgggacttttgaaacttaaaggaccactttg 19315832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38473873 - 38473907
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  38473873 tgtttgggacttttgaaacttaaaggaccactttg 38473907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44978751 - 44978717
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  44978751 tgtttgggacttttgaaacttaaaggaccactttg 44978717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 46051608 - 46051642
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  46051608 tgtttgggacttttgaaacttaaaggaccactttg 46051642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 50099114 - 50099080
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  50099114 tgtttgggacttttgaaacttaaaggaccactttg 50099080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 52146916 - 52146882
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  52146916 tgtttgggacttttgaaacttaaaggaccactttg 52146882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33194869 - 33194902
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  33194869 tgtttgggacttttgaaacttaaaggaccacttt 33194902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36781390 - 36781423
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  36781390 tgtttgggacttttgaaacttaaaggaccacttt 36781423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 9878765 - 9878733
Alignment:
Q  3 tttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||| ||||||||||    
T  9878765 tttgggacttttgaaacttaaatgaccactttg 9878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 45670467 - 45670435
Alignment:
Q  3 tttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||| ||||||||||    
T  45670467 tttgggacttttgaaacttaaaggaccactttg 45670435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 46051371 - 46051339
Alignment:
Q  3 tttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||| ||||||||||    
T  46051371 tttgggacttttgaaacttaaaggaccactttg 46051339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 49594943 - 49594911
Alignment:
Q  3 tttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||| ||||||||||    
T  49594943 tttgggacttttgaaacttaaaggaccactttg 49594911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38633951 - 38633985
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38633951 tgtttgggacttttgaaacttaaaagaccactttg 38633985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33651999 - 33652032
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  33651999 tgtttgggacttttgaaacttaaaagaccacttt 33652032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12010710 - 12010744
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12010710 tgtttgggacttttgaaacttaaaggaccactttg 12010744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 24193530 - 24193564
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  24193530 tgtttgggacttttgaaacttaaatgaccactttg 24193564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29485210 - 29485176
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  29485210 tgtttgtgacttttgaaacttaaaagaccactttg 29485176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35443204 - 35443170
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  35443204 tgtttgggacttttgaaacttaaaggaccactttg 35443170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35443469 - 35443503
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  35443469 tgtttgggacttttgaaacttaaaggaccactttg 35443503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41536510 - 41536476
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  41536510 tgtttgggacttttgaaacttaaaagacgactttg 41536476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38633693 - 38633660
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||| |||||||||||||||||||||||||||    
T  38633693 tgtttgagacttttgaaacttaaaagaccacttt 38633660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 23935154 - 23935122
Alignment:
Q  3 tttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||| ||||||||||    
T  23935154 tttgggacttttgaaacttaaatgaccactttg 23935122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 24430868 - 24430900
Alignment:
Q  50 cttaaaggacctttaggtgcatttgacctataa 82  Q
    |||||||||||||||| ||||||||||||||||    
T  24430868 cttaaaggacctttagatgcatttgacctataa 24430900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 33651733 - 33651701
Alignment:
Q  3 tttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||| ||||||    
T  33651733 tttgggacttttgaaacttaaaagacgactttg 33651701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31793866 - 31793900
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31793866 tgtttgggacttttgaaacttaaaagaccactttg 31793900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2960623 - 2960589
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  2960623 tgtttgggacttttgaaacttaaaggaccactttg 2960589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8162959 - 8162993
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  8162959 tgtttggggcttttgaaacttaaaagaccactttg 8162993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11050244 - 11050210
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11050244 tgtttgggacttttgaaacttaaaggaccactttg 11050210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11476539 - 11476505
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11476539 tgtttgggacttttgaaacttaaaggaccactttg 11476505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30876417 - 30876451
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  30876417 tgtttgggacttttgaaacttaaaggaccactttg 30876451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30972159 - 30972193
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  30972159 tgtttgggacttttgaaacttaaaagacgactttg 30972193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31684117 - 31684083
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  31684117 tgtttgggacttttgaaacttaaaggaccactttg 31684083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31684352 - 31684386
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  31684352 tgtttgggacttttgaaacttaaaggaccactttg 31684386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37393981 - 37393947
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  37393981 tgtttgggacttttgaaacttaaaggaccactttg 37393947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37394244 - 37394278
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  37394244 tgtttgggacttttgaaacttaaaggaccactttg 37394278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43968477 - 43968511
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  43968477 tgtttgggacttttgaaacttaaaggaccactttg 43968511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44800657 - 44800691
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  44800657 tgtttgggacttttgaaacttaaatgaccactttg 44800691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 47119914 - 47119880
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  47119914 tgtttgggacttttgaaacttaaaggaccactttg 47119880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35600369 - 35600402
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35600369 tgtttgggacttttgaaacttaaaggaccacttt 35600402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1469711 - 1469743
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  1469711 tgtttgggacttttgaaacttaaaggaccactt 1469743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 47281422 - 47281454
Alignment:
Q  50 cttaaaggacctttaggtgcatttgacctataa 82  Q
    |||||||||||||||| ||||||||||||||||    
T  47281422 cttaaaggacctttagatgcatttgacctataa 47281454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30378911 - 30378877
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30378911 tgtttgggacttttgaaacttaaaagaccactttg 30378877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1077128 - 1077094
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  1077128 tgtttgggacttttgaaacttaaaggaccactttg 1077094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3258790 - 3258756
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  3258790 tgtttgggacttttgaaacttaaaggaccactttg 3258756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12626530 - 12626496
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12626530 tgtttgggacttttgaaacttaaaggaccactttg 12626496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12626794 - 12626828
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12626794 tgtttgggacttttgaaacttaaaggaccactttg 12626828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17942932 - 17942898
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  17942932 tgtttgggacttttgaaacttaaatgaccactttg 17942898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17943194 - 17943228
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  17943194 tgtttgggacttttgaaacttaaaggaccactttg 17943228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29050430 - 29050464
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  29050430 tgtttgggacttttgaaacttaaaggaccactttg 29050464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30379175 - 30379209
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  30379175 tgtttgggacttttgaaacttaaatgaccactttg 30379209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21656412 - 21656378
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21656412 tgtttgggacttttgaaacttaaaagaccactttg 21656378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21890065 - 21890032
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21890065 tgtttgggacttttgaaacttaaaagaccacttt 21890032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38923981 - 38923948
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38923981 tgtttgggacttttgaaacttaaaagaccacttt 38923948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3697040 - 3697006
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  3697040 tgtttgggacttttgaaacttaaaggaccactttg 3697006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19268685 - 19268719
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  19268685 tgtttgggacttttgaaacttaaaggaccactttg 19268719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19664435 - 19664401
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  19664435 tgtttgggacttttgaaacttaaaggaccactttg 19664401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20813688 - 20813722
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  20813688 tgtttgggacttttgaaacttaaaggaccactttg 20813722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21564654 - 21564688
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  21564654 tgtttgggacttttgaaacttaaaggaccactttg 21564688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21656676 - 21656710
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  21656676 tgtttgggacttttgaaacttaaaggaccactttg 21656710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28699823 - 28699857
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28699823 tgtttgggacttttgaaacttaaaggaccactttg 28699857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 36315219 - 36315253
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  36315219 tgtttgggacttttgaaacttaaaggaccactttg 36315253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47329421 - 47329455
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  47329421 tgtttgggacttttgaaacttaaaggaccactttg 47329455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10618698 - 10618731
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  10618698 tgtttgggacttttgaaacttaaaggaccacttt 10618731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35346454 - 35346421
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  35346454 tgtttgggacttttgaaacttaaaggaccacttt 35346421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40922148 - 40922115
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||| |||||||||||||||||||||||||||    
T  40922148 tgtttgagacttttgaaacttaaaagaccacttt 40922115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 45380507 - 45380536
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagacca 30  Q
    ||||||||||||||||||||||||||||||    
T  45380507 tgtttgggacttttgaaacttaaaagacca 45380536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1106806 - 1106840
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1106806 tgtttgggacttttgaaacttaaaagaccactttg 1106840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31187389 - 31187423
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31187389 tgtttgggacttttgaaacttaaaagaccactttg 31187423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31195449 - 31195483
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31195449 tgtttgggacttttgaaacttaaaagaccactttg 31195483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 771959 - 771925
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  771959 tgtttgggacttttgaaacttaaaggaccactttg 771925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 2057088 - 2057118
Alignment:
Q  5 tgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||||||    
T  2057088 tgggacttttgaaacttaaaagaccactttg 2057118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7297479 - 7297513
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  7297479 tgtttgggacttttgaaacttaaaagacgactttg 7297513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7378857 - 7378823
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  7378857 tgtttgggacttttgaaacttaaaagactactttg 7378823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12759996 - 12760030
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  12759996 tgtttgggacttttgaaacttaaaagacgactttg 12760030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17484533 - 17484499
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  17484533 tgtttgggacttttgaaacttaaaggaccactttg 17484499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 27328791 - 27328825
Alignment:
Q  50 cttaaaggacctttaggtgcatttgacctataata 84  Q
    |||||||||||||||| ||||||||||||||||||    
T  27328791 cttaaaggacctttagatgcatttgacctataata 27328825  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 41500740 - 41500774
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  41500740 tgtttgggacttttgaaacttaaaggaccactttg 41500774  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42629879 - 42629845
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42629879 tgtttgggacttttgaaacttaaaggaccactttg 42629845  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 2057132 - 2057165
Alignment:
Q  50 cttaaaggacctttaggtgcatttgacctataat 83  Q
    |||||||||||||||| |||||||||||||||||    
T  2057132 cttaaaggacctttagatgcatttgacctataat 2057165  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38751206 - 38751239
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    ||||| ||||||||||||||||||||||||||||    
T  38751206 tgtttaggacttttgaaacttaaaagaccacttt 38751239  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 40854768 - 40854801
Alignment:
Q  2 gtttgggacttttgaaacttaaaagaccactttg 35  Q
    ||||||||||||||||||||||| ||||||||||    
T  40854768 gtttgggacttttgaaacttaaaggaccactttg 40854801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19916204 - 19916236
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  19916204 tgtttgggacttttgaaacttaaaggaccactt 19916236  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 23671746 - 23671714
Alignment:
Q  50 cttaaaggacctttaggtgcatttgacctataa 82  Q
    |||||||||||||||| ||||||||||||||||    
T  23671746 cttaaaggacctttagatgcatttgacctataa 23671714  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 37654301 - 37654333
Alignment:
Q  50 cttaaaggacctttaggtgcatttgacctataa 82  Q
    |||||||||||||||| ||||||||||||||||    
T  37654301 cttaaaggacctttagatgcatttgacctataa 37654333  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38750942 - 38750910
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactt 33  Q
    |||||| ||||||||||||||||||||||||||    
T  38750942 tgtttgagacttttgaaacttaaaagaccactt 38750910  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 219044 - 219077
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  219044 tgtttgggacttttgaaacttaaaagaccacttt 219077  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39002212 - 39002245
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  39002212 tgtttgggacttttgaaacttaaaagaccacttt 39002245  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6600383 - 6600417
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  6600383 tgtttgggacttttgaaacttaaaggaccactttg 6600417  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6740202 - 6740236
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  6740202 tgtttgggacttttgaaacttaaaggaccactttg 6740236  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14952247 - 14952213
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  14952247 tgtttgggacttttgaaacttaaaggaccactttg 14952213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17002403 - 17002437
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  17002403 tgtttgggacttttgaaacttaaatgaccactttg 17002437  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20408427 - 20408393
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  20408427 tgtttgggacttttgaaacttaaaggaccactttg 20408393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27116341 - 27116375
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  27116341 tgtttgggacttttgaaacttaaaggaccactttg 27116375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28078388 - 28078354
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28078388 tgtttgggacttttgaaacttaaaggaccactttg 28078354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28078652 - 28078686
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  28078652 tgtttggggcttttgaaacttaaaagaccactttg 28078686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31710176 - 31710142
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  31710176 tgtttgggacttttgaaacttaaaggaccactttg 31710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42993412 - 42993378
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  42993412 tgtttgggacttttgaaacttaaaggaccactttg 42993378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6600119 - 6600086
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  6600119 tgtttgggacttttgaaacttaaaggaccacttt 6600086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20079504 - 20079537
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  20079504 tgtttgggacttttgaaacttaaaggaccacttt 20079537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27116082 - 27116049
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||| |||||||||||||||||||||||||||    
T  27116082 tgtttgagacttttgaaacttaaaagaccacttt 27116049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 14717497 - 14717465
Alignment:
Q  3 tttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||| ||||||||||    
T  14717497 tttgggacttttgaaacttaaaggaccactttg 14717465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5274 - 5308
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||| ||||||||||||||||||||||||||||    
T  5274 tgtttgagacttttgaaacttaaaagaccactttg 5308  T

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Target: scaffold0542 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1976 - 1942
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    ||||||| |||||||||||||||||||||||||||    
T  1976 tgtttggaacttttgaaacttaaaagaccactttg 1942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2191 - 2224
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  2191 tgtttgggacttttgaaacttaaaggaccacttt 2224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 2055179 - 2055145
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  2055179 tgtttgggacttttgaaacttaaatgaccactttg 2055145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10588738 - 10588772
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  10588738 tgtttgggacttttgaaacttaaaggaccactttg 10588772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11795137 - 11795103
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11795137 tgtttgggacttttgaaacttaaaggaccactttg 11795103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15985168 - 15985202
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  15985168 tgtttgggacttttgaaacttaaaggaccactttg 15985202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28812533 - 28812567
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28812533 tgtttgggacttttgaaacttaaatgaccactttg 28812567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 32118608 - 32118574
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccactttg 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  32118608 tgtttgggacttttgaaacttaaaggaccactttg 32118574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8881996 - 8881963
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8881996 tgtttgggacttttgaaacttaaaggaccacttt 8881963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9800397 - 9800430
Alignment:
Q  1 tgtttgggacttttgaaacttaaaagaccacttt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9800397 tgtttgggacttttgaaacttaaaggaccacttt 9800430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 14523 - 14491
Alignment:
Q  50 cttaaaggacctttaggtgcatttgacctataa 82  Q
    |||||||||||||||| ||||||||||||||||    
T  14523 cttaaaggacctttagatgcatttgacctataa 14491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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