View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_49 (Length: 325)
Name: NF11851_high_49
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_49 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 16537128 - 16537452
Alignment:
| Q |
1 |
ccaaaaatattgtacaaggcagtcttatgattctcttccgtactattacataagatttcacaaggaatcaagaaacctttgttgattgtagtttcgacat |
100 |
Q |
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| T |
16537128 |
ccaaaaatattgtacaaggcagttttatgattctcttccgtactattacataagatttcacaaggaatcaagaagcctttgttgattgtagtttcgacat |
16537227 |
T |
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| Q |
101 |
cggacacaactatcttggtgaaatctaaatcaacatagaagcaatttcttagacaagaaatgtcttgtgacttagataagattggttcggtgacgggact |
200 |
Q |
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| T |
16537228 |
cggacacaactatgttggtgaaatcaaaatcaacatagaagcaattacttagacaagaaatgtcttgtgacttagataagattggtttggtgacgggact |
16537327 |
T |
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| Q |
201 |
cacatctaggttgatgaatgtttccatggttgcgctaacgatcaattctttaaggcaaggttcaaagaagaattaacgatcaattctatagggcaaggtt |
300 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16537328 |
cacatctaggttgatgaaggtttccatggttgagctaacgatcaattctttaaggcaaggttcaaagaagaattaacgatcaattctttagggcaaggtt |
16537427 |
T |
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| Q |
301 |
caaagaagaaattagaatggtttag |
325 |
Q |
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|||| |||||||||||||||||||| |
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| T |
16537428 |
caaataagaaattagaatggtttag |
16537452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 16542841 - 16543158
Alignment:
| Q |
1 |
ccaaaaatattgtacaaggcagtcttatgattctcttccgtactattacataagatttcacaaggaatcaagaaacctttgttgattgtagtttcgacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16542841 |
ccaaaaatattgtacaaggcagtcttatgattctcttccgtactattacataagatttcacaaggaatcaagaaacctttgttgattgtagtttcgacat |
16542940 |
T |
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| Q |
101 |
cggacacaactatcttggtgaaatctaaatcaacatagaagcaatttcttagacaagaaatgtcttgtgacttagataagattggttcggtgacgggact |
200 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
16542941 |
cggacacaactatgttggtgaaatcaaaatcaacatagaagcaatttcttagacaagaaatgtcttgtgacttagataagattggttcggtgacaggact |
16543040 |
T |
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| Q |
201 |
cacatctaggttgatgaatgtttccatggttgcgctaacgatcaattctttaaggcaaggttcaaagaagaattaacgatcaattctatagggcaaggtt |
300 |
Q |
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| T |
16543041 |
cacatctaggttgatgaaggtttccatggttgagct-------aattctttagggcaaggtttaaagaagaattaacaatcaattctttagggcaaggtt |
16543133 |
T |
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| Q |
301 |
caaagaagaaattagaatggtttag |
325 |
Q |
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||||||||||||||||||||||||| |
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| T |
16543134 |
caaagaagaaattagaatggtttag |
16543158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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