View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_50 (Length: 324)
Name: NF11851_high_50
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_50 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 18418127 - 18417835
Alignment:
| Q |
14 |
agagagtcaatgaaacttatctcttgaacacaagttctgaaaagattgtaataccaagaaactcaacaaagatttcaactataaaaaagtcaaagagctt |
113 |
Q |
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| T |
18418127 |
agagagtcaatgaaacttatctcttgaacacaagttctgaaaagattgtaataccaagaaactcaacaaagatttcaactataaaaaagtcaaagagctt |
18418028 |
T |
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| Q |
114 |
taaagaaggttctactgaggcatcattgagttactcttcaaatttgatcactgattcaccagggagtattgctggcttgaggagagaacagatggcattg |
213 |
Q |
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| T |
18418027 |
taaagaaggttctactgaggcatcattgagttactcttcaaatttgatcactgattcaccagggagtattgctggcttgaggagagaacagatggcattg |
18417928 |
T |
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| Q |
214 |
cagaatgctcagaggaaaatgaagattgctcattatggaagatcaaagtctgcaaaatttgaaagtgtttctattcctcttgattcttcaaac |
306 |
Q |
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| T |
18417927 |
cagaatgctcagaggaaaatgaagattgctcattatggaagatcaaagtctgcaaaatttgaaagtgtttctattcctcttgattcttcaaac |
18417835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 26804429 - 26804282
Alignment:
| Q |
136 |
tcattgagttactcttcaaatttgatcactgattcaccagggagtattgctggcttgaggagagaacagatggcattgcagaatgctcagaggaaaatga |
235 |
Q |
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||||||||||| ||||| ||||||||||||||||||||| || || |||| | || || ||||| ||||| | ||| | || || |||||||||| |
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| T |
26804429 |
tcattgagttattcttcttctttgatcactgattcaccaggaagcatagctgctgttagaagggaacaagtggcacttcagcaagcacaaaggaaaatga |
26804330 |
T |
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| Q |
236 |
agattgctcattatggaagatcaaagtctgcaaaatttgaaagtgttt |
283 |
Q |
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| T |
26804329 |
agattgctcattatggaagatcaaaatctgctaaatttgaaagagttt |
26804282 |
T |
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