View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11851_high_65 (Length: 253)

Name: NF11851_high_65
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11851_high_65
NF11851_high_65
[»] chr7 (2 HSPs)
chr7 (4-242)||(33596959-33597196)
chr7 (39-113)||(2276306-2276382)
[»] chr8 (2 HSPs)
chr8 (39-113)||(40175923-40175999)
chr8 (61-113)||(26018491-26018543)
[»] chr5 (2 HSPs)
chr5 (60-113)||(12504635-12504690)
chr5 (39-113)||(3907683-3907759)
[»] chr3 (1 HSPs)
chr3 (60-113)||(45332573-45332628)
[»] chr4 (1 HSPs)
chr4 (34-113)||(52374946-52375027)
[»] chr2 (2 HSPs)
chr2 (62-113)||(1469768-1469821)
chr2 (60-113)||(44247593-44247648)
[»] chr1 (1 HSPs)
chr1 (60-113)||(23317964-23318019)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 33596959 - 33597196
Alignment:
Q  4 gtgtccttccaattcttggcggttttatcaatagattaaaattcacacgcttccttccaaattatgttggtcccatataaattgggtggatcatgtgaat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33596959 gtgtccttccaattcttggcggttttatcaatagattaaaattcacacgcttccttccaaattatgttggtcccatatgaattgggtggatcatgtgaat 33597058  T
Q  104 tttaaccaatgaagaaatgagtaggaaagtgtgtgtagcatcattctaaaatcaaattgcatcgtatggataaagggaaatcaagtgtcatctacacttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  33597059 tttaaccaatgaagaaatgagtaggaaagtgtgtgtagcatcattctaaaatcaaattgcatcgta-cgataaagggaaatcaagtgtcatctacacttt 33597157  T
Q  204 aaactatacatccatttgtagctaacttggtttgttctt 242  Q
     ||||||||||| ||||||||||||||||||||||||||    
T  33597158 gaactatacatcgatttgtagctaacttggtttgttctt 33597196  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 2276382 - 2276306
Alignment:
Q  39 ttaaaattcacacgcttccttccaaattatgttggtcccatataaattgggt-ggat-catgtgaattttaaccaat 113  Q
    |||||||||||| |  |||  ||||||||||| |||||| |||||||| ||| |||| |||||||||||||||||||    
T  2276382 ttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgggatccatgtgaattttaaccaat 2276306  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 40175999 - 40175923
Alignment:
Q  39 ttaaaattcacacgcttccttccaaattatgttggtcccatataaattgggtggat--catgtgaattttaaccaat 113  Q
    |||||||||||| |  |||  ||||||||||| ||||||||||||||| |||||||  |||||||||||||||||||    
T  40175999 ttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtggatcccatgtgaattttaaccaat 40175923  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 26018543 - 26018491
Alignment:
Q  61 caaattatgttggtcccatataaattgggtggatcatgtgaattttaaccaat 113  Q
    |||||||||| ||||||||||||||| ||||| ||  ||||||||||||||||    
T  26018543 caaattatgtgggtcccatataaatttggtgggtctcgtgaattttaaccaat 26018491  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 12504690 - 12504635
Alignment:
Q  60 ccaaattatgttggtcccatataaattgggtgga--tcatgtgaattttaaccaat 113  Q
    ||||||||||||||||||||||||||| | ||||  ||||||||||||||| ||||    
T  12504690 ccaaattatgttggtcccatataaatttgttggaattcatgtgaattttaatcaat 12504635  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 3907759 - 3907683
Alignment:
Q  39 ttaaaattcacacgcttccttccaaattatgttggtcccatataaattgggtggat--catgtgaattttaaccaat 113  Q
    |||||||||||| |  |||  |||||| |||| ||||||||||||||| ||||| |  |||||||||||||||||||    
T  3907759 ttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaat 3907683  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 45332628 - 45332573
Alignment:
Q  60 ccaaattatgttggtcccatataaattgggtggat--catgtgaattttaaccaat 113  Q
    |||||| |||| ||||||||||||||| |||||||  |||||||||||||||||||    
T  45332628 ccaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaat 45332573  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 52374946 - 52375027
Alignment:
Q  34 atagattaaaattcacacgcttccttccaaattatgttggtcccatataaattgggtggatc--atgtgaattttaaccaat 113  Q
    ||||||||||||||||| |  ||   ||||||||||| |||||| |||||||| | ||||||  ||||||||||||||||||    
T  52374946 atagattaaaattcacatggatctcaccaaattatgtgggtcccgtataaatttgatggatcaaatgtgaattttaaccaat 52375027  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 1469821 - 1469768
Alignment:
Q  62 aaattatgttggtcccatataaattgggtggat--catgtgaattttaaccaat 113  Q
    |||| |||| ||||||||||||||| |||||||  |||||||||||||||||||    
T  1469821 aaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaat 1469768  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 44247593 - 44247648
Alignment:
Q  60 ccaaattatgttggtcccatataaattgggtggat--catgtgaattttaaccaat 113  Q
    ||||||||||| ||||||||| ||||| | |||||  |||||||||||||||||||    
T  44247593 ccaaattatgtgggtcccatacaaatttgatggatcccatgtgaattttaaccaat 44247648  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 23317964 - 23318019
Alignment:
Q  60 ccaaattatgttggtcccatataaattgggtgga--tcatgtgaattttaaccaat 113  Q
    |||||| |||| |||||||||||||||  |||||  ||||||||||||||||||||    
T  23317964 ccaaatcatgtgggtcccatataaatttagtggatctcatgtgaattttaaccaat 23318019  T

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