View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_high_71 (Length: 243)
Name: NF11851_high_71
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5948568 - 5948804
Alignment:
| Q |
1 |
atttaactttaaaacttattgcacactttttcttataaataccactcacatagtacctcataccaccctaaaataagtgaaatattgttcttaatgtaac |
100 |
Q |
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| T |
5948568 |
atttaactttaaaacttattgcacactttttcttataaat-ccactcacatagtacctcataccaccctaaaataagtgaaatattgttcttaatgtaac |
5948666 |
T |
|
| Q |
101 |
attagttaatttatttctattttatccttaagttaattattagaacaacaattagtaactaattattaaagaaaacttaaatcggaaacaattgaacacg |
200 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5948667 |
attagttaatttatttcaatattatccttaagttaattattagaacaacaattagtaactaattattaaagaaaacttaaatcggaaacaattgaacatg |
5948766 |
T |
|
| Q |
201 |
atcgtttgtttatgtagttcgaccaattctgcctacct |
238 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
5948767 |
atcgtttgtttatgtagttcgaccaattgtgcctacct |
5948804 |
T |
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