View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11851_high_80 (Length: 211)

Name: NF11851_high_80
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11851_high_80
NF11851_high_80
[»] chr2 (25 HSPs)
chr2 (10-211)||(27118506-27118707)
chr2 (11-211)||(31891550-31891750)
chr2 (10-211)||(34156829-34157030)
chr2 (10-211)||(34303525-34303726)
chr2 (10-211)||(3784472-3784673)
chr2 (10-211)||(16163417-16163618)
chr2 (19-211)||(19456643-19456835)
chr2 (19-211)||(21703386-21703578)
chr2 (34-146)||(27434734-27434846)
chr2 (15-163)||(27392813-27392961)
chr2 (34-146)||(23128856-23128968)
chr2 (34-146)||(28882053-28882165)
chr2 (34-146)||(12655381-12655493)
chr2 (36-146)||(20837759-20837869)
chr2 (16-143)||(11635482-11635609)
chr2 (16-143)||(11641671-11641798)
chr2 (16-143)||(37925314-37925441)
chr2 (16-146)||(34279270-34279400)
chr2 (16-185)||(13936795-13936964)
chr2 (82-146)||(32049685-32049749)
chr2 (34-146)||(37375000-37375112)
chr2 (76-143)||(21677475-21677542)
chr2 (79-192)||(261009-261122)
chr2 (34-143)||(16829631-16829740)
chr2 (34-143)||(16891741-16891850)
[»] chr8 (16 HSPs)
chr8 (10-211)||(9354444-9354645)
chr8 (10-211)||(19659231-19659432)
chr8 (10-211)||(44562923-44563124)
chr8 (15-211)||(22081070-22081263)
chr8 (34-211)||(16283292-16283472)
chr8 (16-146)||(19687923-19688053)
chr8 (34-203)||(14557470-14557639)
chr8 (34-146)||(16277397-16277509)
chr8 (34-146)||(2137519-2137631)
chr8 (16-146)||(18710411-18710541)
chr8 (16-146)||(19286290-19286420)
chr8 (34-146)||(27609165-27609277)
chr8 (16-143)||(31490013-31490140)
chr8 (172-211)||(33244649-33244688)
chr8 (34-146)||(31354367-31354479)
chr8 (16-143)||(19674263-19674390)
[»] chr7 (26 HSPs)
chr7 (10-211)||(31088583-31088784)
chr7 (10-211)||(45733283-45733484)
chr7 (19-211)||(16450117-16450309)
chr7 (19-211)||(16041155-16041347)
chr7 (34-163)||(16503550-16503679)
chr7 (34-163)||(16518586-16518715)
chr7 (16-146)||(5127818-5127948)
chr7 (38-203)||(10916995-10917160)
chr7 (16-211)||(5159348-5159543)
chr7 (34-146)||(2154417-2154529)
chr7 (172-211)||(2109124-2109163)
chr7 (172-211)||(26484679-26484718)
chr7 (34-143)||(26435101-26435210)
chr7 (34-146)||(11424963-11425075)
chr7 (16-143)||(5147530-5147657)
chr7 (172-211)||(18540784-18540823)
chr7 (172-211)||(39211142-39211181)
chr7 (16-146)||(4145310-4145440)
chr7 (172-211)||(2775344-2775383)
chr7 (16-143)||(45387169-45387296)
chr7 (79-143)||(11441449-11441513)
chr7 (35-143)||(16736650-16736758)
chr7 (35-143)||(16751704-16751812)
chr7 (35-143)||(17523377-17523485)
chr7 (35-143)||(17529730-17529838)
chr7 (16-192)||(26485885-26486061)
[»] chr6 (31 HSPs)
chr6 (10-211)||(13522249-13522450)
chr6 (10-211)||(33374432-33374633)
chr6 (11-211)||(28162477-28162677)
chr6 (10-211)||(8892486-8892687)
chr6 (10-211)||(8903721-8903922)
chr6 (19-211)||(22477449-22477644)
chr6 (78-211)||(20160588-20160721)
chr6 (78-211)||(22172110-22172243)
chr6 (34-203)||(22935064-22935233)
chr6 (34-203)||(23857509-23857678)
chr6 (16-178)||(24304830-24304992)
chr6 (16-211)||(29549300-29549495)
chr6 (16-162)||(26918202-26918348)
chr6 (34-146)||(13299195-13299307)
chr6 (34-146)||(15424561-15424673)
chr6 (34-146)||(26999913-27000025)
chr6 (34-146)||(26988841-26988953)
chr6 (35-146)||(16749695-16749806)
chr6 (34-146)||(24863557-24863669)
chr6 (172-211)||(14143461-14143500)
chr6 (172-211)||(26787925-26787964)
chr6 (172-211)||(27196298-27196337)
chr6 (172-211)||(27252903-27252942)
chr6 (160-211)||(27290546-27290597)
chr6 (172-211)||(22457110-22457149)
chr6 (16-146)||(4525111-4525241)
chr6 (19-192)||(27629907-27630080)
chr6 (34-146)||(27044230-27044342)
chr6 (15-143)||(30558263-30558391)
chr6 (79-149)||(29501291-29501361)
chr6 (34-143)||(26116666-26116775)
[»] chr5 (27 HSPs)
chr5 (10-211)||(13184778-13184979)
chr5 (10-211)||(13440624-13440825)
chr5 (10-211)||(33877078-33877279)
chr5 (10-211)||(11325625-11325826)
chr5 (19-211)||(22888310-22888502)
chr5 (34-207)||(25198884-25199057)
chr5 (34-211)||(23892058-23892238)
chr5 (34-203)||(24969876-24970042)
chr5 (34-203)||(30934488-30934657)
chr5 (160-211)||(29889212-29889263)
chr5 (34-146)||(24688355-24688467)
chr5 (16-146)||(33777321-33777451)
chr5 (34-146)||(11549206-11549318)
chr5 (34-146)||(23718186-23718298)
chr5 (34-146)||(23752648-23752760)
chr5 (16-211)||(33292362-33292557)
chr5 (34-146)||(22999312-22999424)
chr5 (15-143)||(30168302-30168430)
chr5 (34-146)||(9548741-9548853)
chr5 (16-143)||(3789360-3789487)
chr5 (16-143)||(31431262-31431389)
chr5 (34-211)||(32599602-32599779)
chr5 (15-143)||(18375613-18375741)
chr5 (15-143)||(33516189-33516317)
chr5 (34-146)||(15658958-15659070)
chr5 (79-143)||(18500949-18501013)
chr5 (79-143)||(43078146-43078210)
[»] chr3 (43 HSPs)
chr3 (10-211)||(17994058-17994259)
chr3 (10-211)||(4625727-4625928)
chr3 (10-211)||(5652170-5652371)
chr3 (19-211)||(16626780-16626972)
chr3 (19-211)||(18530186-18530372)
chr3 (10-137)||(5713007-5713134)
chr3 (10-137)||(5723917-5724044)
chr3 (10-137)||(5757433-5757560)
chr3 (10-137)||(5768324-5768451)
chr3 (16-203)||(8301549-8301736)
chr3 (16-146)||(15893048-15893178)
chr3 (34-146)||(4796995-4797107)
chr3 (34-146)||(18051066-18051178)
chr3 (16-211)||(4892999-4893194)
chr3 (16-146)||(8211527-8211657)
chr3 (17-211)||(32438944-32439138)
chr3 (16-146)||(35880552-35880682)
chr3 (34-146)||(15741424-15741536)
chr3 (16-211)||(22387852-22388047)
chr3 (16-146)||(4721417-4721547)
chr3 (34-203)||(8295779-8295948)
chr3 (34-146)||(18277394-18277506)
chr3 (34-146)||(18292695-18292807)
chr3 (34-146)||(18307996-18308108)
chr3 (34-146)||(20065850-20065962)
chr3 (34-146)||(29149097-29149209)
chr3 (172-211)||(32292697-32292736)
chr3 (16-146)||(6192102-6192232)
chr3 (16-143)||(28116302-28116429)
chr3 (16-143)||(29665330-29665457)
chr3 (172-211)||(31034391-31034430)
chr3 (16-146)||(5466771-5466901)
chr3 (16-146)||(7072998-7073128)
chr3 (76-146)||(10395982-10396052)
chr3 (16-146)||(18330460-18330585)
chr3 (82-146)||(7996414-7996478)
chr3 (82-146)||(10642922-10642986)
chr3 (15-143)||(17985301-17985429)
chr3 (79-143)||(47023302-47023366)
chr3 (79-149)||(5596705-5596775)
chr3 (34-211)||(28021082-28021259)
chr3 (79-211)||(4346961-4347093)
chr3 (79-143)||(11110706-11110770)
[»] chr4 (21 HSPs)
chr4 (10-211)||(24460838-24461039)
chr4 (19-211)||(15227716-15227908)
chr4 (19-211)||(1900103-1900295)
chr4 (19-211)||(15285161-15285353)
chr4 (19-211)||(14235758-14235953)
chr4 (15-211)||(15391571-15391764)
chr4 (34-146)||(17013858-17013970)
chr4 (16-203)||(24592555-24592742)
chr4 (16-211)||(34189193-34189388)
chr4 (16-146)||(14664858-14664988)
chr4 (17-211)||(24112506-24112700)
chr4 (16-146)||(54833230-54833360)
chr4 (34-211)||(36344748-36344925)
chr4 (34-146)||(14763605-14763717)
chr4 (34-143)||(6569711-6569820)
chr4 (15-143)||(5005709-5005837)
chr4 (15-146)||(27163618-27163749)
chr4 (16-117)||(19373101-19373202)
chr4 (16-143)||(14098381-14098508)
chr4 (16-143)||(31126822-31126949)
chr4 (88-146)||(21969613-21969671)
[»] scaffold0260 (1 HSPs)
scaffold0260 (10-211)||(2891-3092)
[»] chr1 (5 HSPs)
chr1 (10-211)||(20340568-20340769)
chr1 (19-163)||(20460935-20461079)
chr1 (54-211)||(16208264-16208418)
chr1 (172-211)||(28151845-28151884)
chr1 (82-145)||(41793610-41793673)
[»] scaffold0124 (3 HSPs)
scaffold0124 (19-163)||(20240-20384)
scaffold0124 (34-146)||(30296-30408)
scaffold0124 (180-209)||(20380-20409)
[»] scaffold0109 (1 HSPs)
scaffold0109 (15-163)||(21391-21539)
[»] scaffold0089 (3 HSPs)
scaffold0089 (34-146)||(29606-29718)
scaffold0089 (82-146)||(40370-40434)
scaffold0089 (34-146)||(47286-47398)
[»] scaffold0029 (1 HSPs)
scaffold0029 (16-146)||(431-561)
[»] scaffold0143 (1 HSPs)
scaffold0143 (34-146)||(27135-27247)
[»] scaffold0558 (1 HSPs)
scaffold0558 (160-211)||(261-312)
[»] scaffold0336 (1 HSPs)
scaffold0336 (16-146)||(8057-8187)
[»] scaffold0237 (1 HSPs)
scaffold0237 (15-143)||(15234-15362)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 27118506 - 27118707
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  27118506 atggacatcaatgctgctcagctacctccgtcgtacccgcatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 27118605  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | | ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27118606 cgggtcaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctaccttccc 27118705  T
Q  210 tc 211  Q
    ||    
T  27118706 tc 27118707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 31891750 - 31891550
Alignment:
Q  11 tggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatc 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||    
T  31891750 tggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatc 31891651  T
Q  111 gggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcct 210  Q
    ||| |||||||||||||||||||||||| | | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31891650 gggacaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcct 31891551  T
Q  211 c 211  Q
    |    
T  31891550 c 31891550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 34156829 - 34157030
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  34156829 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 34156928  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34156929 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 34157028  T
Q  210 tc 211  Q
    ||    
T  34157029 tc 34157030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 34303726 - 34303525
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  34303726 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 34303627  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||| | | |  |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34303626 cgggtcaacctcaggtacccgttaatgtcgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 34303527  T
Q  210 tc 211  Q
    ||    
T  34303526 tc 34303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 3784472 - 3784673
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  3784472 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 3784571  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  3784572 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagtagcaacaggctagacctacctttcc 3784671  T
Q  210 tc 211  Q
    ||    
T  3784672 tc 3784673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 16163417 - 16163618
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||    
T  16163417 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccat 16163516  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16163517 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 16163616  T
Q  210 tc 211  Q
    ||    
T  16163617 tc 16163618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 19456835 - 19456643
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||||| ||||| ||||||||||||| ||||| | | || ||||||||||||||||||||||||||| | |||||||||||||    
T  19456835 aatgctgcccagttacctccgtcgtacccatatgcgcaatactttcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaac 19456736  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||| |||||||||||||| | | |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19456735 ctcaggtgcccgttaatgccatcgtttagcaaatgcaacaacagccaccagctcaacaacaacagcagcaacaagctagacctacctttcctc 19456643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 21703578 - 21703386
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    ||||||||  || |||||||||| ||||| ||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21703578 aatgctgcctagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 21703479  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||||||||||| | | ||| |||| |||||||||||| |||| |||||||| |||||| |||||||||||||||||||| ||||    
T  21703478 ctcaggtacccgttaatgccgtcgttcaacaaatgcaacaacagccaccagttcaacaacaacagcatcaacaagctagacctaccttccctc 21703386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 27434846 - 27434734
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||| ||||| |||||||  |||||||||| | | || ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  27434846 cctccgtcgtacccatatgcgccgtactctcagcatcctttctttccaccattctatcatcagtaccctttgccaccgggtcaacctcaagtacccgtta 27434747  T
Q  134 atgccattgctca 146  Q
    |||| ||||||||    
T  27434746 atgcaattgctca 27434734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 27392813 - 27392961
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    |||| |||||||||||||||||||  | |||| |||   |||||||||||||| | | || || |||||||||||||| ||||||||    ||  |||||    
T  27392813 catcgatgctgctcagctacctccaccgtaccagtacatgcaatactctcagcatcctttcttcccaccattctatcaccagtatccgccaccgccgggt 27392912  T
Q  115 caacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagc 163  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  27392913 caacctcaggtacccgtcaatgccattgctcagcaaatgcaacaacagc 27392961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 23128968 - 23128856
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  23128968 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 23128869  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  23128868 atgcaatcgctca 23128856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 28882053 - 28882165
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  28882053 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 28882152  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  28882153 atgcaatcgctca 28882165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 12655381 - 12655493
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||  ||||| ||||||||||||| ||||||||||    
T  12655381 cctccgtcctacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgtta 12655480  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  12655481 atgcaatcgctca 12655493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 20837759 - 20837869
Alignment:
Q  36 tccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaat 135  Q
    |||||| ||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||  ||||| ||||||||||||| ||||||||||||    
T  20837759 tccgtcctacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgttaat 20837858  T
Q  136 gccattgctca 146  Q
    || || |||||    
T  20837859 gcaatcgctca 20837869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 11635609 - 11635482
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || || ||||| ||||||||||| ||| ||||| ||||||    
T  11635609 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtc 11635510  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| |||||||| ||||| |||||    
T  11635509 aacctcaagtacccgtcaatgcaattgc 11635482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 11641798 - 11641671
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || || ||||| ||||||||||| ||| ||||| ||||||    
T  11641798 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtc 11641699  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| |||||||| ||||| |||||    
T  11641698 aacctcaagtacccgtcaatgcaattgc 11641671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 37925314 - 37925441
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||    
T  37925314 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtc 37925413  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| || ||||| ||||| |||||    
T  37925414 aacctcaagtgcccgtcaatgcgattgc 37925441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 34279270 - 34279400
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| || |||||||| ||| ||||| ||||||    
T  34279270 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtc 34279369  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| || ||||| ||||| ||||||||    
T  34279370 aacctcaagtgcccgtcaatgcaattgctca 34279400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 13936964 - 13936795
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| || |||||||| ||| ||||| ||||||    
T  13936964 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtc 13936865  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagca 185  Q
    ||||||| || ||||| ||||| ||||| || || | | |||||||||  || | |||||||| ||||||    
T  13936864 aacctcaagtgcccgtcaatgcaattgcccaacagatgaaacaacagctgccggttcaacaacaacagca 13936795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 32049685 - 32049749
Alignment:
Q  82 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 146  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  32049685 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 32049749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 37375000 - 37375112
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  |||||||||| | | || || || || || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  37375000 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccgccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 37375099  T
Q  134 atgccattgctca 146  Q
    ||| ||| |||||    
T  37375100 atgtcatcgctca 37375112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 21677542 - 21677475
Alignment:
Q  76 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 143  Q
    ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  21677542 tttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcgattgc 21677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 261122 - 261009
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaac 178  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||| || || | | ||||||||   |||| ||||||||    
T  261122 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgcccaacagatgaaacaacagttgccagttcaacaac 261023  T
Q  179 gacagcagcaacaa 192  Q
     ||| || ||||||    
T  261022 aacaacaacaacaa 261009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 16829740 - 16829631
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| |||| || ||||| || ||||| |    
T  16829740 cctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccagcctcaagtgcccgtca 16829641  T
Q  134 atgccattgc 143  Q
    |||| |||||    
T  16829640 atgcaattgc 16829631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 16891741 - 16891850
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| |||| || ||||| || ||||| |    
T  16891741 cctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccagcctcaagtgcccgtca 16891840  T
Q  134 atgccattgc 143  Q
    |||| |||||    
T  16891841 atgcaattgc 16891850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 7e-82; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 9354444 - 9354645
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  9354444 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 9354543  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9354544 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 9354643  T
Q  210 tc 211  Q
    ||    
T  9354644 tc 9354645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 19659432 - 19659231
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  19659432 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 19659333  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  19659332 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacaacctccagctcaacaacgacagcagcaacaggctagacctacctttcc 19659233  T
Q  210 tc 211  Q
    ||    
T  19659232 tc 19659231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 44562923 - 44563124
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||||    
T  44562923 atggacatcaatgctgctcagctacctccgtcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccat 44563022  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    |||| ||||||||||||||||||||||||   | ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44563023 cgggacaacctcaggtacccgttaatgccgccgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 44563122  T
Q  210 tc 211  Q
    ||    
T  44563123 tc 44563124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 22081263 - 22081070
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat---cg 111  Q
    ||||||||||||||||||||||||| | || | |||   |||||||||||||| | | || || |||||||| ||||| ||||||||   |||||   ||    
T  22081263 catcaatgctgctcagctacctccgccgtatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccg 22081167  T
Q  112 ggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||    ||||||||    |||||||||||| | ||||||||||||||||    
T  22081166 ggtcaacctcaggtacccgtcaatgccattgctcagcaaatgcagcaacagccgttggctcaaca---gcagcagcaacaaaccagacctacctttcctc 22081070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 16283292 - 16283472
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||| ||||| |||||||  |||||||||| | | || ||||| |||||||||||| |||||||||||||| | |||||||||||||||||| |||    
T  16283292 cctccgtcgtacccatatgcgccgtactctcagcatcctttctttccgccattctatcattagtatcctttgccaccaggtcaacctcaggtacccatta 16283391  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagct---caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||| |||||||| || | | ||||||||   || | |   ||||||| ||| || |||||||||||||||||||| ||||    
T  16283392 atgcaattgctcaacagatgaaacaacagttgccggttcaacaacaacaacaacatcaacaagctagacctaccttccctc 16283472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 19687923 - 19688053
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||| ||  | |||||||||||||| |||||||  || || |||| | | || ||||| ||||||||||| ||||| ||| ||||| ||||||    
T  19687923 atcaatgctgcccaaatgcctccgtcatacccatatgcgccgtattcccagcatcctttctttccgccattctatcaccagtaccctctgccaccgggtc 19688022  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||||||||| ||||||||    
T  19688023 aacctcaagtacccgttaatgcaattgctca 19688053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 14557470 - 14557639
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | |||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||| ||||    
T  14557470 cctccgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacctgtta 14557569  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
    |||| || ||||| || | | ||||||||   |||| |||||||| |||  | || ||||||||||||||    
T  14557570 atgcaatcgctcaacagatgaaacaacagttgccagttcaacaacaacaaaatcagcaagctagacctac 14557639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 16277397 - 16277509
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  16277397 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 16277496  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  16277497 atgcaatcgctca 16277509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 2137631 - 2137519
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||||| | | || |||||  |||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  2137631 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgtcattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 2137532  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  2137531 atgcaatcgctca 2137519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 18710411 - 18710541
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  18710411 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 18710510  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    |||||||||| ||||| |||||  |||||||    
T  18710511 aacctcaggttcccgtcaatgcagttgctca 18710541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 19286290 - 19286420
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||| ||| |||| |    
T  19286290 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttaccaccgggcc 19286389  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    |||||||||| || || ||||||||||||||    
T  19286390 aacctcaggttcctgtcaatgccattgctca 19286420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 27609277 - 27609165
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| |   || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  27609277 cctccgtcatacccatatgtgtcgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 27609178  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  27609177 atgcaatcgctca 27609165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 31490140 - 31490013
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||    
T  31490140 atcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtc 31490041  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| || ||||| ||||| |||||    
T  31490040 aacctcaagtgcccgtcaatgcgattgc 31490013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 33244649 - 33244688
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  33244649 caacaacgacagcagcaacaggctagacctacctttcctc 33244688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 31354367 - 31354479
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  31354367 cctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 31354466  T
Q  134 atgccattgctca 146  Q
    ||||||| |||||    
T  31354467 atgccatcgctca 31354479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 19674263 - 19674390
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| |||||||| || ||| ||||| ||||||    
T  19674263 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttatcatcaataccctctgccaccgggtc 19674362  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| || ||||| ||||| |||||    
T  19674363 aacctcaagtgcccgtcaatgcaattgc 19674390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 31088784 - 31088583
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  31088784 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 31088685  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31088684 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 31088585  T
Q  210 tc 211  Q
    ||    
T  31088584 tc 31088583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 45733283 - 45733484
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  45733283 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 45733382  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45733383 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 45733482  T
Q  210 tc 211  Q
    ||    
T  45733483 tc 45733484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 16450309 - 16450117
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||||| |||||||| ||||| |||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  16450309 aatgctgcccagttacctccgtcgtacccgtacgcgcagtactctcagcatcccttctttccaccattttatcatcagtatcctttgccatcgggtcaac 16450210  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||| |||||||| | | |||||||  |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  16450209 ctcaggtacccattaatgccgtcgttcagcaagtgcaacaacagccaccagctcaacagcaacagcagcaacaagctagacctacctttcctc 16450117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 16041155 - 16041347
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||||| ||||| ||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  16041155 aatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgtcatcgggtcaac 16041254  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||| || | | |||||||| |||||||||||| |||| |||||||| |||||| |||||||||||||||||||| ||||    
T  16041255 ctcaggtacccgttaattccgtcgttcagcaaatgcaacaacagccaccagttcaacaacaacagcatcaacaagctagacctaccttccctc 16041347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 16503679 - 16503550
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  |||||||||| | | || ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16503679 cctccgtcatacccatatgcgccgtactctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtta 16503580  T
Q  134 atgccattgctcagcaaacgcaacaacagc 163  Q
    |||| |||||||| || | | |||||||||    
T  16503579 atgcaattgctcaacagatgaaacaacagc 16503550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 16518715 - 16518586
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  |||||||||| | | || ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16518715 cctccgtcatacccatatgcgccgtactctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtta 16518616  T
Q  134 atgccattgctcagcaaacgcaacaacagc 163  Q
    |||| |||||||| || | | |||||||||    
T  16518615 atgcaattgctcaacagatgaaacaacagc 16518586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 5127818 - 5127948
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||||||| ||||| ||||||    
T  5127818 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtatcctctgccaccgggtc 5127917  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||||||||| ||||||||    
T  5127918 aacctcaagtacccgttaatgcaattgctca 5127948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 10917160 - 10916995
Alignment:
Q  38 cgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgc 137  Q
    |||||||||| |||| ||  || ||||||| | |||| ||||| ||||| ||||||||||||||| ||||| ||||||||||||| ||||| ||||||||    
T  10917160 cgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtatcctctgccaccgggtcaacctcaagtacctgttaatgc 10917061  T
Q  138 cattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
     || ||||| || | | ||||||||   |||| |||||||| |||  | || ||||||||||||||    
T  10917060 aatcgctcaacagatgaaacaacagttgccagttcaacaacaacaaaatcagcaagctagacctac 10916995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 5159348 - 5159543
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  5159348 atcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 5159447  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||| || || |||||||| ||||| ||   |||||| || || |||| |||||| |  ||||||||| | |||||||| || |||||||    
T  5159448 aacctcaggtccctgtcaatgccatcgctcaacaggtgcaacatcaaccgccagttcaacagcagcagcagcaatatgctagaccaacttttcctc 5159543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 2154417 - 2154529
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||| ||||||    
T  2154417 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtatccgtta 2154516  T
Q  134 atgccattgctca 146  Q
    |||| ||||||||    
T  2154517 atgcaattgctca 2154529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 2109163 - 2109124
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2109163 caacaacgacagcagcaacaagctagacctacctttcctc 2109124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 26484679 - 26484718
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26484679 caacaacgacagcagcaacaagctagacctacctttcctc 26484718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 26435101 - 26435210
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  |||||||||| | | || || ||||| || ||||||||||| ||| ||||| ||||||||||||| |||||||| |    
T  26435101 cctccgtcatacccatatatgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtca 26435200  T
Q  134 atgccattgc 143  Q
    |||| |||||    
T  26435201 atgcaattgc 26435210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 11425075 - 11424963
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| || |||||||| ||| ||||| ||||||||||||| ||||||||||    
T  11425075 cctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgtta 11424976  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  11424975 atgcaatcgctca 11424963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 5147657 - 5147530
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | ||||||||||| || |||  ||  |||||||||| | | || || ||||| || ||||||||||| ||| ||||| ||||||    
T  5147657 atcaatgcagctcaaatgcctccgtcatatccatatatgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtc 5147558  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| |||||||| ||||| |||||    
T  5147557 aacctcaagtacccgtcaatgcaattgc 5147530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 18540784 - 18540823
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18540784 caacaacgacagcagcaacaagctagacctacttttcctc 18540823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 39211181 - 39211142
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  39211181 caacaacgaccgcagcaacaagctagacctacctttcctc 39211142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 4145440 - 4145310
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  4145440 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 4145341  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    |||||||||| || || |||||||| |||||    
T  4145340 aacctcaggttcctgtcaatgccatcgctca 4145310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 2775344 - 2775383
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  2775344 caacaacgacagtagcaacaggctagacctacctttcctc 2775383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 45387169 - 45387296
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || || ||||| ||||||||||| ||| ||||| ||||||    
T  45387169 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtc 45387268  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| || ||||| ||||| |||||    
T  45387269 aacctcaagtgcccgtcaatgcaattgc 45387296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 11441449 - 11441513
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 143  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  11441449 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 11441513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 16736758 - 16736650
Alignment:
Q  35 ctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaa 134  Q
    ||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| |||||||| || ||| ||||| ||||||||||||| || ||||| ||    
T  16736758 ctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttatcatcaataccctctgccaccgggtcaacctcaagtgcccgtcaa 16736659  T
Q  135 tgccattgc 143  Q
    ||| |||||    
T  16736658 tgcaattgc 16736650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 16751812 - 16751704
Alignment:
Q  35 ctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaa 134  Q
    ||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| |||||||| || ||| ||||| ||||||||||||| || ||||| ||    
T  16751812 ctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttatcatcaataccctctgccaccgggtcaacctcaagtgcccgtcaa 16751713  T
Q  135 tgccattgc 143  Q
    ||| |||||    
T  16751712 tgcaattgc 16751704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 17523377 - 17523485
Alignment:
Q  35 ctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaa 134  Q
    ||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| |||||||| || ||| ||||| ||||||||||||| || ||||| ||    
T  17523377 ctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttatcatcaataccctctgccaccgggtcaacctcaagtgcccgtcaa 17523476  T
Q  135 tgccattgc 143  Q
    ||| |||||    
T  17523477 tgcaattgc 17523485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 17529838 - 17529730
Alignment:
Q  35 ctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaa 134  Q
    ||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| |||||||| || ||| ||||| ||||||||||||| || ||||| ||    
T  17529838 ctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttatcatcaataccctctgccaccgggtcaacctcaagtgcccgtcaa 17529739  T
Q  135 tgccattgc 143  Q
    ||| |||||    
T  17529738 tgcaattgc 17529730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 26486061 - 26485885
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  |||||||||| | | || || ||||| || || |||||||| ||  ||||| ||||||    
T  26486061 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtactctcagcatccgttcttcccaccgttttaccatcagtaccccctgccaccgggtc 26485962  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaa 192  Q
    ||||||| || ||||| ||||| ||||| || || | | ||||||||   |||| |||||||| ||| || ||||||    
T  26485961 aacctcaagtgcccgtcaatgcaattgcccaacagatgaaacaacagttgccagttcaacaacaacaacaacaacaa 26485885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 13522450 - 13522249
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  13522450 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 13522351  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13522350 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 13522251  T
Q  210 tc 211  Q
    ||    
T  13522250 tc 13522249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 33374633 - 33374432
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  33374633 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 33374534  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33374533 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 33374434  T
Q  210 tc 211  Q
    ||    
T  33374433 tc 33374432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 28162477 - 28162677
Alignment:
Q  11 tggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatc 110  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||    
T  28162477 tggacatcaatgctgctcagctacctccatcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctttgccatc 28162576  T
Q  111 gggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcct 210  Q
    ||| |||||||||||||||||||||||| | | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28162577 gggacaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcct 28162676  T
Q  211 c 211  Q
    |    
T  28162677 c 28162677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 8892687 - 8892486
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||| |||||||||||| |||||||||    
T  8892687 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtattctttgccat 8892588  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | | ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8892587 cgggtcaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 8892488  T
Q  210 tc 211  Q
    ||    
T  8892487 tc 8892486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 8903922 - 8903721
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |  ||| |||||||||||||||||||||||| |||||||||    
T  8903922 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatctcttctttccaccattctatcatcagtattctttgccat 8903823  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | | ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8903822 cgggtcaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 8903723  T
Q  210 tc 211  Q
    ||    
T  8903722 tc 8903721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 22477644 - 22477449
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||  |||||| ||| |||||||||||||| |||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  22477644 aatgctgcccaattacctctgtcgtacccgtatgcgcagtactctcagcatcccttctttccaccattctatcattagtatcctttgccatcgggtcaac 22477545  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagct---caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||| |||||||| |||| |||||||||| | || | |   ||||||||||| ||||||||||||||||||||||||||||    
T  22477544 ctcaggtacccgttaatgcaattgctcaacaaatgcaacaacagtcaccggttcaacaacaacgacaacagcaacaagctagacctacctttcctc 22477449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 20160588 - 20160721
Alignment:
Q  78 tccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaa 177  Q
    ||||||||| || |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||||    
T  20160588 tccaccattttaccatcagtatcctctaccaccgggtcaacctcaggtacccgttaatgccattgctcagcaaaaacagcaacagccaccagctcaacaa 20160687  T
Q  178 cgacagcagcaacaagctagacctacctttcctc 211  Q
    | ||| ||||||||| ||||||||||||||||||    
T  20160688 caacaacagcaacaaactagacctacctttcctc 20160721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 22172243 - 22172110
Alignment:
Q  78 tccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaa 177  Q
    ||||||||| || |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||||    
T  22172243 tccaccattttaccatcagtatcctctaccaccgggtcaacctcaggtacccgttaatgccattgctcagcaaaaacagcaacagccaccagctcaacaa 22172144  T
Q  178 cgacagcagcaacaagctagacctacctttcctc 211  Q
    | ||| ||||||||| ||||||||||||||||||    
T  22172143 caacaacagcaacaaactagacctacctttcctc 22172110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 22935233 - 22935064
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||| | | |||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |    
T  22935233 cctccgtcatacccatatgcgccgtattctcaacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtca 22935134  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
    |||| |||||||| || | | ||||||||   || | |||||||| |||  | || ||||||||||||||    
T  22935133 atgcaattgctcaacagatgaaacaacagttgccggttcaacaacaacaaaatcagcaagctagacctac 22935064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 23857678 - 23857509
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||| | | |||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |    
T  23857678 cctccgtcatacccatatgcgccgtattctcaacatcccttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtca 23857579  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
    |||| |||||||| || | | ||||||||   || | |||||||| |||  | || ||||||||||||||    
T  23857578 atgcaattgctcaacagatgaaacaacagttgccggttcaacaacaacaaaatcagcaagctagacctac 23857509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 24304992 - 24304830
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||| ||  | |||||||||||||| |||| ||  || ||||||| | |||| ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  24304992 atcaatgctgcccaaatgcctccgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtc 24304893  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaac 178  Q
    ||||||| |||||||||||||| || ||||| || | | ||||||||  ||||| ||||||||    
T  24304892 aacctcaagtacccgttaatgcaatcgctcaacagatgaaacaacagtttccagttcaacaac 24304830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 29549300 - 29549495
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  29549300 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 29549399  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||| || || |||||||| ||||| ||   |||||| || || |||| ||||||||  ||||||||| | |||||||| || |||||||    
T  29549400 aacctcaggttcctgtcaatgccatcgctcaacaggtgcaacatcaaccgccagttcaacaacagcagcagcaatacgctagaccaacttttcctc 29549495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 26918202 - 26918348
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  26918202 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 26918301  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacag 162  Q
    ||||||| |||||||| ||||| |||||||| || ||| ||||||||    
T  26918302 aacctcaagtacccgtcaatgcaattgctcaacagacgaaacaacag 26918348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 13299307 - 13299195
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  13299307 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 13299208  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  13299207 atgcaatcgctca 13299195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 15424673 - 15424561
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  15424673 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 15424574  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  15424573 atgcaatcgctca 15424561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 26999913 - 27000025
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  26999913 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 27000012  T
Q  134 atgccattgctca 146  Q
    |||| ||||||||    
T  27000013 atgcaattgctca 27000025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 26988841 - 26988953
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  26988841 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 26988940  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  26988941 atgcaatcgctca 26988953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 16749695 - 16749806
Alignment:
Q  35 ctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaa 134  Q
    ||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| |||||||||||    
T  16749695 ctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgttaa 16749794  T
Q  135 tgccattgctca 146  Q
    ||| || |||||    
T  16749795 tgcaatcgctca 16749806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 24863557 - 24863669
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| ||||||||||||||||| ||| | ||| || ||||||| || ||||||||||    
T  24863557 cctccgtcctacccatatgcgccgtattctcagcatcctttctttccgccattctatcatcagtaccctctaccaccgagtcaaccccaagtacccgtta 24863656  T
Q  134 atgccattgctca 146  Q
    |||| ||||||||    
T  24863657 atgcaattgctca 24863669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 14143500 - 14143461
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14143500 caacaacgacagcagcaacaagctagacctacctttcctc 14143461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 26787925 - 26787964
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26787925 caacaacgacagcagcaacaagctagacctacctttcctc 26787964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 27196298 - 27196337
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27196298 caacaacgacagcagcaacaagctagacctacctttcctc 27196337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 27252942 - 27252903
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27252942 caacaacgacagcagcaacaagctagacctacctttcctc 27252903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 27290597 - 27290546
Alignment:
Q  160 cagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||||||    
T  27290597 cagccaccggctcaacaacgacagcagcaataagctagacctacctttcctc 27290546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 22457149 - 22457110
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  22457149 caacaacgacaacagcaacaagctagacctacctttcctc 22457110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 4525111 - 4525241
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||||||||||||| | || |    
T  4525111 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtatcctttgccaccaggcc 4525210  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    |||||||||| || || |||||||| |||||    
T  4525211 aacctcaggttcctgtcaatgccatcgctca 4525241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 27630080 - 27629907
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||| |||||||||||||||  ||||||| | | | | ||| ||||||| | | || || ||||| || || ||||| |||||||||||||| || | ||    
T  27630080 aatgttgctcagctacctccaccatacccctgtacaccatattctcagcatccattcttcccaccgttttaccatcaatatcctttgccatcaggaccac 27629981  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaa 192  Q
    ||||||||||||| ||||| ||||  || || | || |||||| || |||| ||| |||| ||| |||||||||    
T  27629980 ctcaggtacccgtgaatgctattgtgcaacagaagccacaacaaccaccagttcagcaacaacaacagcaacaa 27629907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 27044230 - 27044342
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  27044230 cctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 27044329  T
Q  134 atgccattgctca 146  Q
    ||||||| |||||    
T  27044330 atgccatcgctca 27044342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 30558391 - 30558263
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    ||||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  30558391 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 30558292  T
Q  115 caacctcaggtacccgttaatgccattgc 143  Q
    || ||||| || ||||| ||||| |||||    
T  30558291 cagcctcaagtgcccgtcaatgcaattgc 30558263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 29501291 - 29501361
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagca 149  Q
    ||||| || ||||||||||| ||||||||| | || ||||||||||| || || |||||||| ||||||||    
T  29501291 ccaccgttttatcatcagtaccctttgccacccggccaacctcaggttcctgtcaatgccatcgctcagca 29501361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 26116775 - 26116666
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  || ||||||| ||| || || ||||| || ||||||||||| ||||||||| |||| || ||||| || ||||| |    
T  26116775 cctccgtcatacccatatatgccgtattctcagcattcgttcttcccaccgttttatcatcagtaccctttgccaccgggccagcctcaagtgcccgtca 26116676  T
Q  134 atgccattgc 143  Q
    |||| |||||    
T  26116675 atgcaattgc 26116666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 13184979 - 13184778
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  13184979 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 13184880  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13184879 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 13184780  T
Q  210 tc 211  Q
    ||    
T  13184779 tc 13184778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 13440825 - 13440624
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  13440825 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 13440726  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13440725 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 13440626  T
Q  210 tc 211  Q
    ||    
T  13440625 tc 13440624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 33877078 - 33877279
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  33877078 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 33877177  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33877178 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 33877277  T
Q  210 tc 211  Q
    ||    
T  33877278 tc 33877279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 11325625 - 11325826
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  11325625 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 11325724  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
     ||| |||||||||||||||||||||||| | | ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11325725 tgggacaacctcaggtacccgttaatgccgtcgttcagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 11325824  T
Q  210 tc 211  Q
    ||    
T  11325825 tc 11325826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 22888310 - 22888502
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||||| ||||| ||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  22888310 aatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 22888409  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||| ||||||||||| | | |||||||| |||||||||||| |||| |||||||| |||||| |||||||||||||||||||| ||||    
T  22888410 ctcaggtaaccgttaatgccgtcgttcagcaaatgcaacaacagccaccagttcaacaacaacagcatcaacaagctagacctaccttccctc 22888502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 25198884 - 25199057
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||| ||||| |||||||  |||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25198884 cctccgtcgtacccatatgcgccgtactctcagcatcctttctttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtactcgtta 25198983  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctaccttt 207  Q
    | ||| | | |||||||| |||||||||||| |||| |||||||| |||||| |||||||||||||||||||||    
T  25198984 acgccgtcgttcagcaaatgcaacaacagccaccagttcaacaacaacagcatcaacaagctagacctaccttt 25199057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 23892058 - 23892238
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||| ||||| |||||||  |||||||||| | | || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23892058 cctccgtcgtacccatatgcgccgtactctcagcatcctttctttccaacattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtca 23892157  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagct---caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||| | |||||||| |||||||||||| || | |   ||||||| ||| || |||||||||||||||||||||||||    
T  23892158 atgccatcgttcagcaaatgcaacaacagccaccggttcaacaacaacaacaacatcaacaagctagacctacctttcctc 23892238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 24969876 - 24970042
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||| ||||| |||||||  || ||||||| | | || ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  24969876 cctccgtcgtacccatatgcgccgtattctcagcatcctttctttccgccattctatcatcagtatcccttgccaccgggtcaacctcaggtacccgtta 24969975  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
    |||| |||||||| || | | |||||||||  || | ||||||   ||| || |||||||||||||||||    
T  24969976 atgcaattgctcaacagatgaaacaacagctgccggttcaaca---acaacatcaacaagctagacctac 24970042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 30934488 - 30934657
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | |||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  30934488 cctccgtcatacccatatgtgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 30934587  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
    |||| || ||||| || | | ||||||||   |||| |||||||| |||  | || ||||||||||||||    
T  30934588 atgcaatcgctcaacagatgaaacaacagttgccagttcaacaacaacaaaatcagcaagctagacctac 30934657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 29889263 - 29889212
Alignment:
Q  160 cagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29889263 cagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 29889212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 24688467 - 24688355
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||| | | | || ||||| ||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  24688467 cctccgtcatacccatatgcgccgtattctcaacatcctttctttccgccattctatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 24688368  T
Q  134 atgccattgctca 146  Q
    || | ||||||||    
T  24688367 atacaattgctca 24688355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 33777321 - 33777451
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  33777321 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 33777420  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||||||||| || |||||    
T  33777421 aacctcaagtacccgttaatgcaatcgctca 33777451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 11549206 - 11549318
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || || |||| | | || ||||||||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  11549206 cctccgtcatacccatatgtgccgtattcacagcatcctttctttccaccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 11549305  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  11549306 atgcaatcgctca 11549318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 23718298 - 23718186
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  23718298 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 23718199  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  23718198 atgcaatcgctca 23718186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 23752760 - 23752648
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  23752760 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 23752661  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  23752660 atgcaatcgctca 23752648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 33292362 - 33292557
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  33292362 atcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 33292461  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||| || || |||||||| ||||| ||   |||||| || || |||| |||||| |  ||||| ||| | |||||||| || |||||||    
T  33292462 aacctcaggtccctgtcaatgccatcgctcaacaggtgcaacatcaaccgccagttcaacagcagcagcaacaatatgctagaccaacttttcctc 33292557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 22999424 - 22999312
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||  ||||||||||||| ||||||||||    
T  22999424 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccgccgggtcaacctcaagtacccgtta 22999325  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  22999324 atgcaatcgctca 22999312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 30168302 - 30168430
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    ||||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| |||||    
T  30168302 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggt 30168401  T
Q  115 caacctcaggtacccgttaatgccattgc 143  Q
    |||||||| || ||||| ||||| |||||    
T  30168402 caacctcaagtgcccgtcaatgcaattgc 30168430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 9548853 - 9548741
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| || |||||||| ||| ||||| ||||||||||||| |||||||| |    
T  9548853 cctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgtca 9548754  T
Q  134 atgccattgctca 146  Q
    |||| ||||||||    
T  9548753 atgcaattgctca 9548741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 3789360 - 3789487
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  3789360 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 3789459  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    | |||||||| ||||| ||||| |||||    
T  3789460 agcctcaggtgcccgtcaatgcaattgc 3789487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 31431262 - 31431389
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||| ||||| ||||||    
T  31431262 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctctgccaccgggtc 31431361  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| |||||||| ||||| |||||    
T  31431362 aacctcaagtacccgtcaatgcaattgc 31431389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 32599779 - 32599602
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| | || ||||||||||| || || |    
T  32599779 cctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccacccggccaacctcaggttcctgtca 32599680  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||| ||||||||    ||||| || || |||| |||||| |  ||||||||| | |||||||| || |||||||    
T  32599679 atgccatcgctcagcaggtacaacatcaaccgccagttcaacagcagcagcagcaatatgctagaccaacttttcctc 32599602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 18375741 - 18375613
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    ||||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  18375741 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 18375642  T
Q  115 caacctcaggtacccgttaatgccattgc 143  Q
    || ||||| || ||||| ||||| |||||    
T  18375641 cagcctcaagtgcccgtcaatgcaattgc 18375613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 33516189 - 33516317
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    ||||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  33516189 catcaatgcggctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 33516288  T
Q  115 caacctcaggtacccgttaatgccattgc 143  Q
    || ||||| || ||||| ||||| |||||    
T  33516289 cagcctcaagtgcccgtcaatgcaattgc 33516317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 15659070 - 15658958
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    ||||||||||| || |||| ||  || ||||||| | | || ||||| || || || |||||||| ||| ||||| ||||||||||||| || ||||| |    
T  15659070 cctccgtcatatccatatgtgccgtattctcagcatcctttctttccgccgttttaccatcagtaccctctgccaccgggtcaacctcaagtgcccgtca 15658971  T
Q  134 atgccattgctca 146  Q
    |||| ||||||||    
T  15658970 atgcaattgctca 15658958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 18501013 - 18500949
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 143  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  18501013 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 18500949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 43078146 - 43078210
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 143  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  43078146 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 43078210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 17994259 - 17994058
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  17994259 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 17994160  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17994159 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 17994060  T
Q  210 tc 211  Q
    ||    
T  17994059 tc 17994058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 4625727 - 4625928
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||    
T  4625727 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattatatcatcagtatcctttgccat 4625826  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||| | | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4625827 cgggtcaacctcaggtacccgttaatgtcgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 4625926  T
Q  210 tc 211  Q
    ||    
T  4625927 tc 4625928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 211
Target Start/End: Original strand, 5652170 - 5652371
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||| ||    
T  5652170 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcgtttgcaat 5652269  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5652270 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 5652369  T
Q  210 tc 211  Q
    ||    
T  5652370 tc 5652371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 16626972 - 16626780
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||||| ||||||||||| ||||||||||||| | |||| |||||||| |||||||||||||||||| | |||||||||||||    
T  16626972 aatgctgcccagttacctccgtcgtacccgtatgcacaatactctcagcatcccttctttccaccgttctatcatcagtatcctctaccatcgggtcaac 16626873  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||| |||||||||||||||||| | |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  16626872 ctccggtacccgttaatgccatcgttcagcaaatgcaacaacagccaccagctcaacaacaacagcagcaacaagctagacctacctttcctc 16626780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 18530186 - 18530372
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| ||||||| || ||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||| | |||||||||||||    
T  18530186 aatgctgcccagttacctccatcgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaac 18530285  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||| || |||||||||||| | | |||||||| |||||||||||| ||||||||      ||||||||||||||||||||||||||||||||    
T  18530286 ctcaagtgcccgttaatgccgtcgttcagcaaatgcaacaacagccaccagctca------acagcagcaacaagctagacctacctttcctc 18530372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 5713007 - 5713134
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||| |||||     
T  5713007 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccac 5713106  T
Q  110 cgggtcaacctcaggtacccgttaatgc 137  Q
    ||||||||||||| || ||||| |||||    
T  5713107 cgggtcaacctcaagtgcccgtcaatgc 5713134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 5723917 - 5724044
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||| |||||     
T  5723917 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccac 5724016  T
Q  110 cgggtcaacctcaggtacccgttaatgc 137  Q
    ||||||||||||| || ||||| |||||    
T  5724017 cgggtcaacctcaagtgcccgtcaatgc 5724044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 5757560 - 5757433
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||| |||||     
T  5757560 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccac 5757461  T
Q  110 cgggtcaacctcaggtacccgttaatgc 137  Q
    ||||||||||||| || ||||| |||||    
T  5757460 cgggtcaacctcaagtgcccgtcaatgc 5757433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 5768451 - 5768324
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||| |||||     
T  5768451 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtaccctctgccac 5768352  T
Q  110 cgggtcaacctcaggtacccgttaatgc 137  Q
    ||||||||||||| || ||||| |||||    
T  5768351 cgggtcaacctcaagtgcccgtcaatgc 5768324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 8301736 - 8301549
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||| ||  | |||||||| ||| | |||||||  || ||||||| | | || ||||| ||||||||||||||||| ||||||||| ||||||    
T  8301736 atcaatgctgcccaaatgcctccgtcgtactcatatgcgccgtattctcagcatcctttctttccgccattctatcatcagtaccctttgccaccgggtc 8301637  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
    ||||||| |||||||||||||| |||||||| || | | ||||||||   |||| |||||||| |||  | || ||||||||||||||    
T  8301636 aacctcaagtacccgttaatgcaattgctcaacagatgaaacaacagttgccagttcaacaacaacaaaatcagcaagctagacctac 8301549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 15893178 - 15893048
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||| ||  | |||||||| ||||| |||||||  |||||||||| | | || ||||| || |||||||||||||| ||||||||| ||||||    
T  15893178 atcaatgctgcccaaatgcctccgtcgtacccatatgcgccgtactctcagcatcctttctttccgcccttctatcatcagtaccctttgccaccgggtc 15893079  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||||||||| ||||||||    
T  15893078 aacctcaagtacccgttaatgcaattgctca 15893048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 4797107 - 4796995
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  4797107 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 4797008  T
Q  134 atgccattgctca 146  Q
    |||| ||||||||    
T  4797007 atgcaattgctca 4796995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 18051066 - 18051178
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||| | | | || ||||| ||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  18051066 cctccgtcatacccatatgcgccgtattctcaacatcctttctttccgccattctatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 18051165  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  18051166 atgcaatcgctca 18051178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 4892999 - 4893194
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  4892999 atcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 4893098  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||| || || |||||||| ||||| ||   |||||| || || |||| |||||| |  ||||||||| | |||||||| || |||||||    
T  4893099 aacctcaggtccctgtcaatgccatcgctcaacaggtgcaacatcaaccgccagttcaacagcagcagcagcaatatgctagaccaacttttcctc 4893194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 8211527 - 8211657
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||||||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  8211527 atcaatgcagctcaaatgcctccgtcatacccatatgcgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 8211626  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    |||||||||| || || |||||||| |||||    
T  8211627 aacctcaggttcctgtcaatgccatcgctca 8211657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 32438944 - 32439138
Alignment:
Q  17 tcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtca 116  Q
    |||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||    
T  32438944 tcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcca 32439043  T
Q  117 acctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||| || || |||||||| ||||| ||   |||||| || || |||| |||||| |  ||||||||| | |||||||| || |||||||    
T  32439044 acctcaggtccctgtcaatgccatcgctcaacaggtgcaacatcaaccgccagttcaacagcagcagcagcaatatgctagaccaacttttcctc 32439138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 35880552 - 35880682
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  35880552 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 35880651  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||||||||| || |||||    
T  35880652 aacctcaagtacccgttaatgcaatcgctca 35880682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 15741536 - 15741424
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  15741536 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 15741437  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  15741436 atgcaatcgctca 15741424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 22388047 - 22387852
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||||||| | || ||||| ||||| ||||| | ||||||||||| | | || || ||| | || ||||||||||| ||||||||| |||| |    
T  22388047 atcaatgctgctcagtttcccccgtcctacccttatgcaccatactctcagcatccgttcttcccatcgttttatcatcagtaccctttgccaccgggcc 22387948  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||| || || |||||||| ||||| ||   |||||| || || |||| |||||| |  ||||| ||| | |||||||| || |||||||    
T  22387947 aacctcaggtccctgtcaatgccatcgctcaacaggtgcaacatcaaccgccagttcaacagcagcagcaacaatatgctagaccgacttttcctc 22387852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 4721417 - 4721547
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| |   || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  4721417 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcttttctttccgccattttatcatcagtaccctctgccaccgggtc 4721516  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||| ||||| ||||||||    
T  4721517 aacctcaagtacccgtcaatgcaattgctca 4721547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 8295779 - 8295948
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| || || ||||||||||||| ||||| ||||    
T  8295779 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgtcaccgggtcaacctcaagtacctgtta 8295878  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
    |||| || ||||| || | | ||||||||   |||  |||||||| |||  | || ||||||||||||||    
T  8295879 atgcaatcgctcaacagatgaaacaacagttgccaattcaacaacaacaaaatcagcaagctagacctac 8295948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 18277506 - 18277394
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  18277506 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 18277407  T
Q  134 atgccattgctca 146  Q
    ||||||| |||||    
T  18277406 atgccatcgctca 18277394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 18292807 - 18292695
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  18292807 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 18292708  T
Q  134 atgccattgctca 146  Q
    ||||||| |||||    
T  18292707 atgccatcgctca 18292695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 18308108 - 18307996
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  18308108 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 18308009  T
Q  134 atgccattgctca 146  Q
    ||||||| |||||    
T  18308008 atgccatcgctca 18307996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 20065850 - 20065962
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  20065850 cctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 20065949  T
Q  134 atgccattgctca 146  Q
    ||||||| |||||    
T  20065950 atgccatcgctca 20065962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 29149209 - 29149097
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||||||||| || |||||||    
T  29149209 cctccgtcatacccatatgtgccgtattctcagcatcctttcttcccaccgttttatcatcagtaccctttgccaccgggtcaacctcaagtgcccgtta 29149110  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  29149109 atgcaatcgctca 29149097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 32292697 - 32292736
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32292697 caacaacgacagcagcaacaagctagacctacctttcctc 32292736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 6192102 - 6192232
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| | | || ||| | ||||| |||||| |||| ||| ||||| ||||||    
T  6192102 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttcttttcgccattttatcattagtaccctctgccaccgggtc 6192201  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||| ||||| ||||||||    
T  6192202 aacctcaagtacccgtcaatgcaattgctca 6192232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 28116429 - 28116302
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || || ||||| ||||||||||| ||| ||||| ||||||    
T  28116429 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggtc 28116330  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| |||||||| ||||| |||||    
T  28116329 aacctcaagtacccgtcaatgcaattgc 28116302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 29665457 - 29665330
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| ||   ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||    
T  29665457 atcaatgcagctcaaatgcctccgtcatacccatacatgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtc 29665358  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    ||||||| || ||||| ||||| |||||    
T  29665357 aacctcaagtgcccgtcaatgcaattgc 29665330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 31034430 - 31034391
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  31034430 caacaacgacagcagcaacaggctagacctacctttcctc 31034391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 5466771 - 5466901
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || |||||||| ||||||||||| ||||||||| | || |    
T  5466771 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccattttatcatcagtaccctttgccacccggcc 5466870  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    |||||||||| || || |||||||| |||||    
T  5466871 aacctcaggttcctgtcaatgccatcgctca 5466901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 7072998 - 7073128
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| || |||||||| ||| ||||| ||||||    
T  7072998 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtc 7073097  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| || ||||| ||||| ||||||||    
T  7073098 aacctcaagtgcccgtcaatgcaattgctca 7073128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 10395982 - 10396052
Alignment:
Q  76 tttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 146  Q
    ||||| ||||| ||||||||||| ||||||||| |||| ||||||||||| || || |||||||| |||||    
T  10395982 tttccgccattttatcatcagtaccctttgccaccgggccaacctcaggttcctgtcaatgccatcgctca 10396052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 18330460 - 18330585
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| | | || ||||||||||| |||||||     ||| ||||| ||||||    
T  18330460 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccaccattttatcatc-----cctctgccaccgggtc 18330554  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||||||||| || |||||    
T  18330555 aacctcaagtacccgttaatgcaatcgctca 18330585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 7996414 - 7996478
Alignment:
Q  82 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 146  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  7996414 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 7996478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 10642922 - 10642986
Alignment:
Q  82 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 146  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  10642922 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 10642986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 17985429 - 17985301
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    ||||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  17985429 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 17985330  T
Q  115 caacctcaggtacccgttaatgccattgc 143  Q
    || ||||| || ||||| ||||| |||||    
T  17985329 cagcctcaagtgcccgtcaatgcaattgc 17985301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 47023302 - 47023366
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 143  Q
    ||||| || ||||||||||| ||| ||||| |||||||||||||||| ||||| ||||| |||||    
T  47023302 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaggtgcccgtcaatgcaattgc 47023366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 5596775 - 5596705
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagca 149  Q
    ||||| || ||||||||||| ||||||||| | || ||||||||||| || || |||||||| ||||||||    
T  5596775 ccaccgttttatcatcagtaccctttgccacccggccaacctcaggttcctgtcaatgccatcgctcagca 5596705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 28021082 - 28021259
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||| ||||||||| | || ||||||||||| || || |    
T  28021082 cctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccacccggccaacctcaggttcctgtca 28021181  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||| ||||| ||    ||||| || || |||| |||||| |  ||||||||| | |||||||| || |||||||    
T  28021182 atgccatcgctcaacaggtacaacatcaaccgccagttcaacagcagcagcagcaatatgctagaccaacttttcctc 28021259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 4347093 - 4346961
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaac 178  Q
    ||||| || ||||||||||| ||||||||| | || ||||||||||| || || |||||||| ||||| ||    ||||| || || |||| |||||| |    
T  4347093 ccaccgttttatcatcagtaccctttgccacccggccaacctcaggttcctgtcaatgccatcgctcaacaggtacaacatcaaccgccagttcaacagc 4346994  T
Q  179 gacagcagcaacaagctagacctacctttcctc 211  Q
      ||||||||| | |||||||| || |||||||    
T  4346993 agcagcagcaatatgctagaccaacttttcctc 4346961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 11110770 - 11110706
Alignment:
Q  79 ccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgc 143  Q
    ||||| || ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||    
T  11110770 ccaccgttttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgc 11110706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 24461039 - 24460838
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||||||    
T  24461039 atggacatcaatgctgctcagctacctccgtcgtacacgtatgcgcaatactctcagcatcccttctttccaccattctatcatcagtattctttgccat 24460940  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||| | |  |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24460939 cgggtcaacctcaggtacccgttaatgccgtcgtccagcgaatgcaacaacagcctccagctcaacaacgacagcagcaacaggctagacctacctttcc 24460840  T
Q  210 tc 211  Q
    ||    
T  24460839 tc 24460838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 15227716 - 15227908
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||||| ||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  15227716 aatgctgcccagttacctccgtcgtacccgtatgcgcaatactctcagcatcccttctttccaccattctatcatcaatatcctttgccatcgggtcaac 15227815  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||||||||||  | | |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  15227816 ctcaggtacccgttaatgctgtcgttcagcaaatgcaacaacagccaccagctcaacaacaacagcagcaacaagctagacctacctttcctc 15227908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 1900103 - 1900295
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||||| ||||| ||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  1900103 aatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccaccattctatcatcagtatcctttgccatcgggtcaac 1900202  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||||||||||| | | |||||||| |||||||||||| |||| |||||| | ||| || |||||||||||||||||||||||||    
T  1900203 ctcaggtacccgttaatgccgtcgttcagcaaatgcaacaacagccaccagttcaacagcaacaacatcaacaagctagacctacctttcctc 1900295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 15285353 - 15285161
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| ||||||| |  ||||| ||||||||||||||||||| | | || ||||||||||||||||||||||||||| | |||||||||||||    
T  15285353 aatgctgcccagttacctccattgtacccatatgcgcaatactctcagcatcctttctttccaccattctatcatcagtatcctctaccatcgggtcaac 15285254  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||| |||||||||||||| | |||||||| |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  15285253 ctcaggtgcccgttaatgccatcgttcagcaaatgcaacaacagccaccaactcaacaacaacagcagcaacaagctagacctacctttcctc 15285161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 14235953 - 14235758
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||||||| |||||| | | |||| ||||  |||||||||||||| | | || || |||||||||||||||||||| ||| | ||||||||||| |    
T  14235953 aatgctgctcagttacctctgccgtaccagtatatgcaatactctcagcatcctttcttcccaccattctatcatcagtaccctctaccatcgggtcacc 14235854  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagca---acaagctagacctacctttcctc 211  Q
    |  |||||||||||||||||||||||||||||| |||||||||||| || ||||| |||| |||||||||   |||||||||||||||||||||||    
T  14235853 cataggtacccgttaatgccattgctcagcaaatgcaacaacagccgccggctcagcaacaacagcagcaacaacaagctagacctacctttcctc 14235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 15391764 - 15391571
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat---cg 111  Q
    |||||||| |||||||||||||||| | || | |||   |||||||||||||| | | || || |||||||| ||||| ||||||||   |||||   ||    
T  15391764 catcaatgttgctcagctacctccgccgtatcagtacatgcaatactctcagcatcctttcttcccaccattttatcaccagtatcc---gccatcgccg 15391668  T
Q  112 ggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||||||||||| | ||||||||||||||||||| ||| |||||||| |  ||||||||   ||||||||||||| | ||||||||||||||||    
T  15391667 ggtcaacctcaggtacccatcaatgccattgctcagcaaatgcagcaacagccgctggctcaaca---acagcagcaacaaaccagacctacctttcctc 15391571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 17013858 - 17013970
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    ||||| |||||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  17013858 cctccttcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 17013957  T
Q  134 atgccattgctca 146  Q
    |||| ||||||||    
T  17013958 atgcaattgctca 17013970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 24592742 - 24592555
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  24592742 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 24592643  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctac 203  Q
    ||||||| |||||||||||||| || ||||| || | | ||||||||   || | |||||||| |||  | || ||||||||||||||    
T  24592642 aacctcaagtacccgttaatgcaatcgctcaacagatgaaacaacagttgccggttcaacaacaacaaaatcagcaagctagacctac 24592555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 34189388 - 34189193
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  34189388 atcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 34189289  T
Q  116 aacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    |||||||||| || || |||||||| ||||| ||   |||||| || || |||| |||||| |  ||||||||| | |||||||| || |||||||    
T  34189288 aacctcaggtccctgtcaatgccatcgctcaacaggtgcaacatcaaccgccagttcaacagcagcagcagcaatatgctagaccaacttttcctc 34189193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 14664858 - 14664988
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    ||||||||||| ||  | |||||||||||||| ||||| |  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  14664858 atcaatgctgcccaaatgcctccgtcatacccatatgcaccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 14664957  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||||||||| || |||||    
T  14664958 aacctcaagtacccgttaatgcaatcgctca 14664988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 24112506 - 24112700
Alignment:
Q  17 tcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtca 116  Q
    |||||||||||||| | || ||||| ||||| ||||| |  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||    
T  24112506 tcaatgctgctcagtttcccccgtcctacccttatgcaccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcca 24112605  T
Q  117 acctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||| || || |||||||| ||||| ||   |||||| || || |||| |||||| |  ||||||||| | |||||||| || |||||||    
T  24112606 acctcaggtccctgtcaatgccatcgctcaacaggtgcaacatcaaccgccagttcaacagcagcagcagcaatatgctagaccaacttttcctc 24112700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 54833230 - 54833360
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||| ||| |||| |    
T  54833230 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttaccaccgggcc 54833329  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    |||||||||| || || ||||||||||||||    
T  54833330 aacctcaggttcctgtcaatgccattgctca 54833360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 36344925 - 36344748
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  |||||||||| | | || || | ||| || ||||||||||||||||||||| |||| ||||||||||| || || |    
T  36344925 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcctaccgttttatcatcagtatcctttgccaccgggccaacctcaggttcctgtca 36344826  T
Q  134 atgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||| ||||| ||   |||||| || || |||| |||||| |  ||||||||| |  ||||||| || |||||||    
T  36344825 atgccatcgctcaacaggtgcaacatcaaccgccagttcaacagcagcagcagcaatatactagaccaacttttcctc 36344748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 14763717 - 14763605
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| |||| ||||||||||| || || |    
T  14763717 cctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggccaacctcaggttcctgtca 14763618  T
Q  134 atgccattgctca 146  Q
    ||||||| |||||    
T  14763617 atgccatcgctca 14763605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 6569711 - 6569820
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||  ||  || ||||||| | | || ||||| ||||| || |||||||| ||| ||||| ||||||||||||| ||||||||||    
T  6569711 cctccgtcatacccatatatgccgtattctcagcatcctttctttccgccattttaccatcagtaccctctgccaccgggtcaacctcaagtacccgtta 6569810  T
Q  134 atgccattgc 143  Q
    |||| |||||    
T  6569811 atgcaattgc 6569820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 5005709 - 5005837
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    ||||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || || ||||| ||||||||||| ||| ||||| |||||    
T  5005709 catcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggt 5005808  T
Q  115 caacctcaggtacccgttaatgccattgc 143  Q
    |||||||| |||||||| ||||| |||||    
T  5005809 caacctcaagtacccgtcaatgcaattgc 5005837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 27163749 - 27163618
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    ||||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || || ||||| ||||||||||| ||| ||||| |||||    
T  27163749 catcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatcctttcttcccgccattttatcatcagtaccctctgccaccgggt 27163650  T
Q  115 caacctcaggtacccgttaatgccattgctca 146  Q
    |||||||| || ||||| ||||| ||||||||    
T  27163649 caacctcaagtgcccgtcaatgcaattgctca 27163618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 19373101 - 19373202
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  |||||||||| | | || || ||||| || ||||||||||| ||||||||| ||||||    
T  19373101 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtactctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggtc 19373200  T
Q  116 aa 117  Q
    ||    
T  19373201 aa 19373202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 14098381 - 14098508
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  14098381 atcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 14098480  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    | ||||| || ||||| ||||| |||||    
T  14098481 agcctcaagtgcccgtcaatgcaattgc 14098508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 31126949 - 31126822
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| |||| |    
T  31126949 atcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggcc 31126850  T
Q  116 aacctcaggtacccgttaatgccattgc 143  Q
    | ||||| || ||||| ||||| |||||    
T  31126849 agcctcaagtgcccgtcaatgcaattgc 31126822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 21969613 - 21969671
Alignment:
Q  88 tatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 146  Q
    ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| ||||||||    
T  21969613 tatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctca 21969671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 3092 - 2891
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  3092 atggacatcaatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 2993  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    |||||||||||||||||||||| |||||| | | ||| |||| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  2992 cgggtcaacctcaggtacccgtcaatgccgtcgttcaacaaatgcaacaacagcctccagctcaacaacaacagcatcagcaagctagacctacctttcc 2893  T
Q  210 tc 211  Q
    ||    
T  2892 tc 2891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 20340769 - 20340568
Alignment:
Q  10 atggacatcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccat 109  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  20340769 atggacatcaatgctgctcagctacctccgtcgtacccgtacgcgcaatactctcagcatcccttctttccaccattctatcatcagtatcctttgccat 20340670  T
Q  110 cgggtcaacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcc 209  Q
    |||||||||||||||||||||| |||||| | | ||| |||| |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  20340669 cgggtcaacctcaggtacccgtcaatgccgtcgttcaacaaatgcaacaacagcctccagctcaacaacaacagcatcagcaagctagacctacctttcc 20340570  T
Q  210 tc 211  Q
    ||    
T  20340569 tc 20340568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 20460935 - 20461079
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||| | ||||||||||||||||||||||||| | | || |||||||||||||||||||| |||||| | |||||||||||||    
T  20460935 aatgctgcccagttacctccgccgtacccgtatgcgcaatactctcagcatcctttctttccaccattctatcatcaatatcctctaccatcgggtcaac 20461034  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagc 163  Q
    |||||||||||||||||||||| | |||||||| |||||||||||    
T  20461035 ctcaggtacccgttaatgccatcgttcagcaaatgcaacaacagc 20461079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 16208418 - 16208264
Alignment:
Q  54 gcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctcagcaaacg 153  Q
    |||||||||||||| | | || || |||||||||||||| ||||||||    ||||||||||| |||||||||||| |||||||||| | |||||||| |    
T  16208418 gcaatactctcagcatcctttcttcccaccattctatcaccagtatccaccaccatcgggtcagcctcaggtacccattaatgccatcgttcagcaaatg 16208319  T
Q  154 caacaacagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||| |||| ||||||   ||| || |||||||||||||||||||||||||    
T  16208318 caacaacagccaccagttcaaca---acaacatcaacaagctagacctacctttcctc 16208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 28151845 - 28151884
Alignment:
Q  172 caacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28151845 caacaacgacagcagcaacaagctagacctacctttcctc 28151884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 41793673 - 41793610
Alignment:
Q  82 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctc 145  Q
    ||||| ||||||||||| ||| ||||| ||||||||||||| || ||||| ||||| |||||||    
T  41793673 ccattttatcatcagtaccctctgccaccgggtcaacctcaagtgcccgtcaatgcaattgctc 41793610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 20240 - 20384
Alignment:
Q  19 aatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaac 118  Q
    |||||||| ||| |||||||||| ||||| ||||||| ||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||    
T  20240 aatgctgcccagttacctccgtcgtacccatatgcgccatactctcagcatcccttctttccatcattctatcatcagtatcctttgccatcgggtcaac 20339  T
Q  119 ctcaggtacccgttaatgccattgctcagcaaacgcaacaacagc 163  Q
    |||||||||||||||||||| | | |||||||| |||||||||||    
T  20340 ctcaggtacccgttaatgccgtcgttcagcaaatgcaacaacagc 20384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 30296 - 30408
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||||| | |||| ||||| ||||| ||||||||||| ||| ||||| ||||||||||||| ||||||||||    
T  30296 cctccgtcatacccatatgcgccgtattctcagcatcccttctttccgccattttatcatcagtaccctctgccaccgggtcaacctcaagtacccgtta 30395  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  30396 atgcaatcgctca 30408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 209
Target Start/End: Original strand, 20380 - 20409
Alignment:
Q  180 acagcagcaacaagctagacctacctttcc 209  Q
    ||||||||||||||||||||||||||||||    
T  20380 acagcagcaacaagctagacctacctttcc 20409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 21391 - 21539
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    |||||||||| |||||||||||||| | |||| |||   |||||||||||||| | | || || |||||||||||||| ||||||||    ||  |||||    
T  21391 catcaatgcttctcagctacctccgccgtaccagtacatgcaatactctcagcatcctttcttcccaccattctatcaccagtatccaccaccgccgggt 21490  T
Q  115 caacctcaggtacccgttaatgccattgctcagcaaacgcaacaacagc 163  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  21491 caacctcaggtacccgtcaatgccattgctcagcaaatgcaacaacagc 21539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 29606 - 29718
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    ||||| || |||||||||||||  || ||||||| | | || ||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  29606 cctccatcgtacccgtatgcgccgtattctcagcatcctttctttccgccattctatcatcagtaccctttgccaccgggtcaacctcaagtacccgtta 29705  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  29706 atgcaatagctca 29718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 40434 - 40370
Alignment:
Q  82 ccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgttaatgccattgctca 146  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  40434 ccattctatcatcagtaccctttgccaccgggtcaacctcaggtacccgtaaatgcaattgctca 40370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 47398 - 47286
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    ||||| |||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||  ||||| ||||||||||||| ||||||||||    
T  47398 cctccatcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccccctgccaccgggtcaacctcaagtacccgtta 47299  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  47298 atgcaatcgctca 47286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 561 - 431
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||| ||  || ||||||| | | || ||||| ||||| ||||||||||| ||| ||||| ||||||    
T  561 atcaatgcagctcaaatgcctccgtcatacccatatgtgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctgccaccgggtc 462  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    ||||||| |||||||||||||| ||||||||    
T  461 aacctcaagtacccgttaatgcaattgctca 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 27135 - 27247
Alignment:
Q  34 cctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtcaacctcaggtacccgtta 133  Q
    |||||||||||||| |||||||  || ||||||| | | || ||||| ||||| ||||||||||| ||| | ||| ||||||||||||| ||||||||||    
T  27135 cctccgtcatacccatatgcgccgtattctcagcatcctttctttccgccattttatcatcagtaccctctaccaccgggtcaacctcaagtacccgtta 27234  T
Q  134 atgccattgctca 146  Q
    |||| || |||||    
T  27235 atgcaatcgctca 27247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0558 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0558
Description:

Target: scaffold0558; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 312 - 261
Alignment:
Q  160 cagcctccagctcaacaacgacagcagcaacaagctagacctacctttcctc 211  Q
    ||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  312 cagccaccagctcaacagcaacagcagcaacaagctagacctacctttcctc 261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 8057 - 8187
Alignment:
Q  16 atcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggtc 115  Q
    |||||||| |||||  | |||||||||||||| |||  ||  || ||||||| | | || || ||||| || ||||||||||||||||||||| | || |    
T  8057 atcaatgcagctcaaatgcctccgtcatacccatatatgccgtattctcagcatccgttcttcccaccgttttatcatcagtatcctttgccaccaggcc 8156  T
Q  116 aacctcaggtacccgttaatgccattgctca 146  Q
    |||||||||| || || |||||||| |||||    
T  8157 aacctcaggttcctgtcaatgccatcgctca 8187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 15362 - 15234
Alignment:
Q  15 catcaatgctgctcagctacctccgtcatacccgtatgcgcaatactctcagccttccttatttccaccattctatcatcagtatcctttgccatcgggt 114  Q
    ||||||||| |||||  | |||||||||||||| |||  || ||| ||||||| | | || || ||||| || ||||||||||| ||||||||| ||||     
T  15362 catcaatgcagctcaaatgcctccgtcatacccatatatgccatattctcagcatccgttcttcccaccgttttatcatcagtaccctttgccaccgggc 15263  T
Q  115 caacctcaggtacccgttaatgccattgc 143  Q
    || ||||| || ||||| ||||| |||||    
T  15262 cagcctcaagtgcccgtcaatgcaattgc 15234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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