View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_10 (Length: 645)
Name: NF11851_low_10
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 242 - 636
Target Start/End: Original strand, 52623775 - 52624160
Alignment:
| Q |
242 |
tcggtctattaaagttctacaaccttatacataacattttttaatgtttgctaaaatcacaatatgacagattatgttacatgctaatacatattggtat |
341 |
Q |
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| T |
52623775 |
tcggtctattaaagttctacaaccttatacataatattttttaatgtt-gctaaaatcacaatatgacagattatgttacatgccaatacatattggtat |
52623873 |
T |
|
| Q |
342 |
gaatgaaatgaatgaatggataccggattaagagtgttatggagcttgaaggtggtctcaagcatggatgattgctcctttgttagcctcagtttctttc |
441 |
Q |
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| T |
52623874 |
gaatgaa-----tgaatggataccggattaagagtgttatggagcttgaaggtgctctcaagcatggatgattgctcctttgttagcctcagtttctttc |
52623968 |
T |
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| Q |
442 |
tacgatcgttgttattattgttgttatcagaatcagtgctacacgttacattttgatacaattggtgtctctccaaattgattctttcacccttgttgtt |
541 |
Q |
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| T |
52623969 |
tacgatcgttgttat---tgttgttatcagaatcagtgctacacgttacattttgataatattggtgtctctccaaattgattctttcacccttgttgtt |
52624065 |
T |
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| Q |
542 |
gttgtgtacgttcataggttctccttttggacaaagctcaaaagctaggtcaaaacaaggtgcaatcataggtttactcaccaatctctgcttct |
636 |
Q |
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| T |
52624066 |
gttgtgtacgttcataggttctccttttgaacaaagctcaaaagctaggtcaaaacaaggtgcaatcacaggtttattcaccaatttctgcttct |
52624160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 52623545 - 52623709
Alignment:
| Q |
1 |
taacgtaccttgctctcctgttctgaaaccaaacttctatttgtcttgcctttaaactcaattggtcagcaagtgctattttctgaacctgcatatatat |
100 |
Q |
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| T |
52623545 |
taacgtaccttgctctcctgttctgaaaccaaacttcaatttgtcttgtctttaaactcaattggtcagcaagtgctattttctgaacctgc--atatat |
52623642 |
T |
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| Q |
101 |
atgtgaatccaaaactaacgcataaacttcttgtcatatagaaaaactaattatattatagttgaac |
167 |
Q |
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| T |
52623643 |
atgtgaatccaaaactaacgcataaagttcttgtcaaatagaaaaactaattatattatagttgaac |
52623709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 408 - 636
Target Start/End: Complemental strand, 40039619 - 40039394
Alignment:
| Q |
408 |
gatgattgctcctttgttagcctcagtttctttctacgatcgttgttattattgttgttatcagaatcagtgctacacgttacattttgatacaattggt |
507 |
Q |
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| T |
40039619 |
gatgattgctcctttgttagcctcagtttttttctacgatcgttgttgtt---gttgttatcagaatcagggctacactttacattttgataatgttggt |
40039523 |
T |
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| Q |
508 |
gtctctccaaattgattctttcacccttgttgttgttgtgtacgttcataggttctccttttggacaaagctcaaaagctaggtcaaaacaaggtgcaat |
607 |
Q |
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| T |
40039522 |
gtctctccaaattgaatctttcacccttcttgttgttgtgtacgttcatagcttcttcttttggacaaagctcaaaagctaggtctaaacaaggtgcaat |
40039423 |
T |
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| Q |
608 |
cataggtttactcaccaatctctgcttct |
636 |
Q |
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| T |
40039422 |
cacaggtttattcactaatttctgcttct |
40039394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 16810322 - 16810252
Alignment:
| Q |
6 |
taccttgctctcctgttctgaaaccaaacttctatttgtcttgcctttaaactcaattggtcagcaagtgc |
76 |
Q |
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| T |
16810322 |
taccttgctcttctgttctggaaccaaacttcaacctgtctttgctttaaattcaattcctcagcaagtgc |
16810252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 16849603 - 16849533
Alignment:
| Q |
6 |
taccttgctctcctgttctgaaaccaaacttctatttgtcttgcctttaaactcaattggtcagcaagtgc |
76 |
Q |
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| T |
16849603 |
taccttgctcttctgttctggaaccaaacttcaacctgtctttgctttaaattcaattcctcagcaagtgc |
16849533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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