View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_11 (Length: 618)
Name: NF11851_low_11
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 16 - 609
Target Start/End: Original strand, 4364747 - 4365340
Alignment:
| Q |
16 |
attttgtttaacaagagtgatagatatttgcagacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaacc |
115 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364747 |
attttgtttaacaagagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaacc |
4364846 |
T |
|
| Q |
116 |
atgtttttgtaccatctgaacaagctcagcataagcttcccaattatacttcattggaccatctttttcgaccaaaccccaccaagcatcaaccattact |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364847 |
atgtttttgtaccatctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgaccaaaccccaccaagcatcaaccattact |
4364946 |
T |
|
| Q |
216 |
ccttcaacaccagcactcttcaaagccatcaaactagcattcattgcccttgctttattcaattttcctcccattgttaccgtgtctaatggcaacatca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364947 |
ccttcaacaccagcactcttcaaagccatcaaactagcattcattgctcttgctttattcaattttcctcccattgttaccgtgtctaatggcaacatca |
4365046 |
T |
|
| Q |
316 |
caaacaccggtactctagttgaatcagcatcgtggttatgagtgaccgatgacgtgtgaatcttctcccatttcttgtctttctttacagcagaattgtt |
415 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4365047 |
caaacaccggtactctattcgaatcaccatcgtggttatgagtgaccgatgacgtgtgaatcttctcccatttcttgtctttctttacagcagaattgtt |
4365146 |
T |
|
| Q |
416 |
gttgtctgttgtgaaatgagtttcttgtattgaactctttgctttgagtttgtgaccaatagatggtttcatttttggacaggaaactttgttggnnnnn |
515 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4365147 |
gttgtctgttgtgaaatgagtttcttgtattgaactctttgctttgagtttgtgaccaatagatggtttcatttttggacaagaaactttgttggaaaaa |
4365246 |
T |
|
| Q |
516 |
nnntcatcaagagattttaagactcttgtttctttctgattaatcaaggaaattgaaaaacgaagtgtttgagccatttttagtgctatctctg |
609 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4365247 |
aaatcatcaagagattttaagactcttgtttctttctgattaatcaaggaaattgaaaaacgaagtgtttgagccatttttagtgctatctctg |
4365340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 592
Target Start/End: Original strand, 4372340 - 4372910
Alignment:
| Q |
16 |
attttgtttaacaagagtgatagatatttgcagacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaacc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4372340 |
attttgtttaacaagagtgatagatatttccatacctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaacc |
4372439 |
T |
|
| Q |
116 |
atgtttttgtaccatctgaacaagctcagcataagcttcccaattatacttcattggaccatctttttcgaccaaaccccaccaagcatcaaccattact |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372440 |
atgtttttgtaccatctgaacaagttcagcataagcttcccaattatacttcattggaccatctttttcgaccaaaccccaccaagcatcaaccattact |
4372539 |
T |
|
| Q |
216 |
ccttcaacaccagcactcttcaaagccatcaaactagcattcattgcccttgctttattcaattttcctcccattgttaccgtgtctaatggcaacatca |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372540 |
ccttcaacaccagcactcttcaaagccatcaaactagcattcattgctcttgctttattcaattttcctcccattgttaccgtgtctaatggcaacatca |
4372639 |
T |
|
| Q |
316 |
caaacaccggtactctagttgaatcagcatcgtggttatgagtgaccgatgacgtgtgaatcttctcccatttcttgtctttctttacagcagaattgtt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| || | ||| |||||||| |||||||| || ||| || ||||| ||| | |
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|
| T |
4372640 |
caaacaccggtactctagttgaatcagcatcgtggttatgagcaatcgatggcgcgagaaccttctcccttttcttgttttccttaactgcagagttggt |
4372739 |
T |
|
| Q |
416 |
gttgtctgttgtgaaatgagtttcttgtattgaactctttgctttgagtttgtgaccaatagatggtttcatttttggacaggaaactttgttggnnnnn |
515 |
Q |
| |
|
||| || |||||||||| |||||||| |||||||||||||||||||| || || || ||||| | ||| ||||| ||||||||||||| |
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| T |
4372740 |
gttttcctttgtgaaatgtgtttcttgcattgaactctttgctttgag-atgaaacaaa-----ggtttgaatttcggacaagaaactttgttggaagaa |
4372833 |
T |
|
| Q |
516 |
nnntcatcaagagattttaagactcttgtttctttctgattaatcaaggaaattgaaaaacgaagtgtttgagccat |
592 |
Q |
| |
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|||||||||||||||||||||||||||||||| | | ||| |||||||||||| ||||||||||| ||||||| |
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|
| T |
4372834 |
aaatcatcaagagattttaagactcttgtttcttttttgtgaatgaaggaaattgaagaacgaagtgttagagccat |
4372910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 49 - 328
Target Start/End: Complemental strand, 41042770 - 41042491
Alignment:
| Q |
49 |
acctgcaagagtcaccaacatttccaccacattgatgaaaagacataacaatttgaagcttcaaaccatgtttttgtaccatctgaacaagctcagcata |
148 |
Q |
| |
|
||||||| || || ||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||| |||||||||||||| |
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|
| T |
41042770 |
acctgcaggaatctccaacatttcctccacactgatgaaaagacataacaacttgaagcttcaaaccatgcaattgcaccatctgcacaagctcagcata |
41042671 |
T |
|
| Q |
149 |
agcttcccaattatacttcattggaccatctttttcgaccaaaccccaccaagcatcaaccattactccttcaacaccagcactcttcaaagccatcaaa |
248 |
Q |
| |
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||||||||| |||||||| | || ||||||||||| ||||||||||||||| |||||||||| || |||||||| |||||||| ||||||||||||||| |
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|
| T |
41042670 |
agcttcccagttatacttgaaaggtccatctttttcaaccaaaccccaccaaacatcaaccatcaccccttcaactccagcacttttcaaagccatcaaa |
41042571 |
T |
|
| Q |
249 |
ctagcattcattgcccttgctttattcaattttcctcccattgttaccgtgtctaatggcaacatcacaaacaccggtac |
328 |
Q |
| |
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|||||||||||||| |||| || ||||| ||||||||||||||||| || || ||||| | ||||||||| || ||||| |
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| T |
41042570 |
ctagcattcattgctcttggcttgttcaagtttcctcccattgttactgtatccaatggaagcatcacaaaaactggtac |
41042491 |
T |
|
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