View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_13 (Length: 562)
Name: NF11851_low_13
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 52170023 - 52169479
Alignment:
| Q |
1 |
aatatttattttggatccaacttagtcggatttggatttaagacactggcaatgtcagcagccattggatttgccaatccattagattaggaacaataca |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52170023 |
aatatttattttggatccaatttagtcggatttggatttaagacactggcaatgtcagcagccattggatttgccaatccattagattaggaacaataca |
52169924 |
T |
|
| Q |
101 |
taaaaagggaatcaaacccataattatatattaaactagaacgccgaccggtgatgacgcacgggtcatattgtaagtaaacattaagaaaaatttaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
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| T |
52169923 |
taaaaagggaatcaaacccataattatatattgaactagaacgccgacccgtgatgacgcacgggtcatattgcaagtaaacactaagaacaatttaaaa |
52169824 |
T |
|
| Q |
201 |
gcttttataagatggcaatgaaataagtcatataataagtcttcaccacgtaaatcatataccatgggaaggattttaattcagatgaccctagtcttaa |
300 |
Q |
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| T |
52169823 |
gcttttataagatggcaatgaaata------------agtcttcactacgtaaatc--ataccatgggaaggattttaattcagatgaccctaatcttaa |
52169738 |
T |
|
| Q |
301 |
ttgtaagagaggnnnnnnnatcggtggatttcgtacattggtaaacatataacacacatgtatattaaaatgcccgagggaaaggaattggctggtttga |
400 |
Q |
| |
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||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52169737 |
ttgta--agaggtatttttatcggtggatttcgtacatttgtaaacatatatcacacatgtatattaaaatgccagagggaaaggaattggctggtttga |
52169640 |
T |
|
| Q |
401 |
t-caaaaacattacaaatagtacatcattgaat-ggtatgtacaaatagtataaaatggcaacacttaaacaattgtaggaaaacattgaaaatagaaaa |
498 |
Q |
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| T |
52169639 |
tgcaaaaacattacgaatagtacatcattgaatgggtatgtacaaatagtataaaatggcaacacttaaacacttgtaggaaaacattgaaaatagaaaa |
52169540 |
T |
|
| Q |
499 |
agagtttaacttcaagtgtactacacattcactgcgacattttagcataaagatctctgct |
559 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
52169539 |
agagcttaacttcaagtgtaatacacattcactgcgacattttagcataaagatttctgct |
52169479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 12852389 - 12852542
Alignment:
| Q |
133 |
aaactagaacgccgaccggtgatgacgcacgggtcatattgtaagtaaacattaagaaaaatttaaaagcttttataagatggcaatgaaataagtcata |
232 |
Q |
| |
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||||||||| || |||| || |||||||||||||||||||| ||||||| ||| |||||| ||||| |||||||||||| ||||||||||||||||| |
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| T |
12852389 |
aaactagaatgctgacccgtaatgacgcacgggtcatattgaaagtaaaatctaaaaaaaatctaaaaacttttataagataacaatgaaataagtcata |
12852488 |
T |
|
| Q |
233 |
taataagtcttcaccacgtaaatcatataccatgggaaggattttaattcagatga |
288 |
Q |
| |
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| T |
12852489 |
taataagtttttactacattaatc--ataccatgggaaggattttaattctgatga |
12852542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 42153530 - 42153673
Alignment:
| Q |
133 |
aaactagaacgccgaccggtgatgacgcacgggtcatattgtaagtaaacattaagaaaaatttaaaagcttttataagatggcaatgaaataagtcata |
232 |
Q |
| |
|
||||||||||| |||| ||| ||||||| ||||||||||| ||||||| | ||| ||| |||||||| ||||||||||||| |||||||| ||||| |
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| T |
42153530 |
aaactagaacgatgacccgtgctgacgcaggggtcatattgaaagtaaatactaaaaaatatttaaaaacttttataagatgacaatgaaa----tcata |
42153625 |
T |
|
| Q |
233 |
taataagtcttcaccacgtaaatcatataccatgggaaggattttaattc |
282 |
Q |
| |
|
|||||| |||| || || | |||| |||||||||||||||||||||||| |
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|
| T |
42153626 |
taataaatctttactacattaatc--ataccatgggaaggattttaattc |
42153673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 30157539 - 30157692
Alignment:
| Q |
133 |
aaactagaacgccgaccggtgatgacgcacgggtcatattgtaagtaaacattaagaaaaatttaaaagcttttataagatggcaatgaaataagtcata |
232 |
Q |
| |
|
||||||||||||||||| ||| ||||||| ||||||||||| ||||||| | |||||||||| ||||| |||||||||||||||||||||||||||| || |
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| T |
30157539 |
aaactagaacgccgacccgtgctgacgcatgggtcatattgaaagtaaatactaagaaaaatctaaaaacttttataagatggcaatgaaataagtcgta |
30157638 |
T |
|
| Q |
233 |
taataagtcttcaccacgtaaatcatataccatgggaaggattttaattcagatga |
288 |
Q |
| |
|
|||||||| || || || | |||| |||||||||||||||||||||||| ||||| |
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|
| T |
30157639 |
taataagtttttacgacattaatc--ataccatgggaaggattttaattccgatga |
30157692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 19633426 - 19633273
Alignment:
| Q |
134 |
aactagaacgccgaccggtgatgacgcacgggtcatattgtaagtaaacattaagaaaaatttaaaagcttttataagatggcaatgaaataagtcatat |
233 |
Q |
| |
|
|||||||||| |||| ||| ||||||||| || |||||||||||||| ||| |||| ||||||| ||||||||| |||||||| |||||||||||| |
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|
| T |
19633426 |
aactagaacgttgacctgtgctgacgcacgagttatattgtaagtaaattctaaaaaaattttaaaaacttttataaaatggcaatagaataagtcatat |
19633327 |
T |
|
| Q |
234 |
aataagtcttcaccacgtaaatcatataccatgggaa-ggattttaattcagatga |
288 |
Q |
| |
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||||| || | || || | |||| |||||||||||| |||||||||||||||||| |
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|
| T |
19633326 |
aataaatccttactacattaatc--ataccatgggaacggattttaattcagatga |
19633273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 13028273 - 13028346
Alignment:
| Q |
207 |
ataagatggcaatgaaataagtcatataataagtcttcaccacgtaaatcatataccatgggaaggattttaattc |
282 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| || || | |||| |||||||||||||||||||||||| |
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|
| T |
13028273 |
ataaaatggcgatgaaataagtcatataataagtctttactacattaatc--ataccatgggaaggattttaattc |
13028346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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