View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11851_low_22 (Length: 457)

Name: NF11851_low_22
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11851_low_22
NF11851_low_22
[»] chr1 (1 HSPs)
chr1 (309-447)||(15840716-15840854)
[»] chr7 (1 HSPs)
chr7 (325-441)||(28006766-28006882)
[»] scaffold0236 (1 HSPs)
scaffold0236 (330-441)||(10191-10303)
[»] chr3 (2 HSPs)
chr3 (309-353)||(7424806-7424850)
chr3 (309-367)||(12220821-12220879)
[»] chr8 (2 HSPs)
chr8 (392-441)||(15075091-15075140)
chr8 (392-440)||(15065795-15065843)
[»] chr4 (2 HSPs)
chr4 (311-360)||(26474994-26475043)
chr4 (101-137)||(44755002-44755038)
[»] chr6 (1 HSPs)
chr6 (402-443)||(4554377-4554420)


Alignment Details
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 309 - 447
Target Start/End: Complemental strand, 15840854 - 15840716
Alignment:
Q  309 gtggtgatgatgtcaggtgttgtttgtggcgatgagaaggcgaggagttgttattaggggctttagcgggggtgatggatttttggagtgactttggtgt 408  Q
    |||||||| |||  |||||| |||||||| |||| ||||  ||||||||||||||||||| || |||| |||||||| ||| |||||||||||||||| |    
T  15840854 gtggtgataatgggaggtgtcgtttgtggtgatgcgaagttgaggagttgttattaggggtttcagcgagggtgatgcattattggagtgactttggtat 15840755  T
Q  409 gagtagcggacgatggatgtttggattttgttttctgtg 447  Q
    ||||| || ||||| ||||||||||||||||||||||||    
T  15840754 gagtaacgaacgatagatgtttggattttgttttctgtg 15840716  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 441
Target Start/End: Original strand, 28006766 - 28006882
Alignment:
Q  325 gtgttgtttgtggcgatgagaaggcgaggagttgttattaggggctttagcgggggtgatggatttttggagtgactttggtgtgagtagcggacgatgg 424  Q
    ||||||||||||| | |||||||| ||||  ||||| ||||||| || |||||| ||||||  ||| | ||||| ||||||||||||||||||  ||| |    
T  28006766 gtgttgtttgtggtgttgagaaggtgaggtattgttgttaggggtttgagcgggtgtgatgattttcttgagtggctttggtgtgagtagcgggtgatag 28006865  T
Q  425 atgtttggattttgttt 441  Q
     |||||| |||||||||    
T  28006866 gtgtttgaattttgttt 28006882  T

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Target: scaffold0236 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 441
Target Start/End: Complemental strand, 10303 - 10191
Alignment:
Q  330 gtttgtggcgatgagaaggcgaggagttgttattaggggcttt-agcgggggtgatggatttttggagtgactttggtgtgagtagcggacgatggatgt 428  Q
    |||| ||| |||||||||| |||| | |||| |||||||  || | |||| ||||||  ||||||||||| ||||||||||||||| || |||  |||||    
T  10303 gtttttggtgatgagaaggtgaggtgctgttgttaggggggttcaccgggtgtgatgattttttggagtggctttggtgtgagtagtgggcgacagatgt 10204  T
Q  429 ttggattttgttt 441  Q
    |||||||||||||    
T  10203 ttggattttgttt 10191  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 7424850 - 7424806
Alignment:
Q  309 gtggtgatgatgtcaggtgttgtttgtggcgatgagaaggcgagg 353  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||    
T  7424850 gtggtgatgatgtgaggtgttgtttgtggtgatgagaaggcgagg 7424806  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 12220821 - 12220879
Alignment:
Q  309 gtggtgatgatgtcaggtgttgtttgtggcgatgagaaggcgaggagttgttattaggg 367  Q
    |||||||||| || ||||||||||||||| |||||||||||| |||| |||| ||||||    
T  12220821 gtggtgatgaggtgaggtgttgtttgtggtgatgagaaggcggggagctgttgttaggg 12220879  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 15075140 - 15075091
Alignment:
Q  392 tggagtgactttggtgtgagtagcggacgatggatgtttggattttgttt 441  Q
    ||||||| ||||||||||||||||||||||| | |||||| |||||||||    
T  15075140 tggagtggctttggtgtgagtagcggacgatagctgtttgaattttgttt 15075091  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 15065843 - 15065795
Alignment:
Q  392 tggagtgactttggtgtgagtagcggacgatggatgtttggattttgtt 440  Q
    |||||||||||||||||||||||||||||||   |||||| ||||||||    
T  15065843 tggagtgactttggtgtgagtagcggacgataactgtttgaattttgtt 15065795  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 26474994 - 26475043
Alignment:
Q  311 ggtgatgatgtcaggtgttgtttgtggcgatgagaaggcgaggagttgtt 360  Q
    |||||||| || ||||||||||||||| ||||||||| ||||| ||||||    
T  26474994 ggtgatgaggtgaggtgttgtttgtggtgatgagaagacgaggtgttgtt 26475043  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 44755002 - 44755038
Alignment:
Q  101 gttggaaaaatatgacatagaattatcattaagtaat 137  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  44755002 gttggaaaaatttgacatataattatcattaagtaat 44755038  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 4554420 - 4554377
Alignment:
Q  402 ttggtgtgagtagcggacgatggatgtt--tggattttgttttc 443  Q
    |||| |||||||||||||||||||||||  ||||||||||||||    
T  4554420 ttggggtgagtagcggacgatggatgtttatggattttgttttc 4554377  T

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