View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11851_low_23 (Length: 451)
Name: NF11851_low_23
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 409
Target Start/End: Original strand, 32997653 - 32998043
Alignment:
| Q |
20 |
gcagaagtgggaaaaaatgtgtctctgaatatcattactcttttannnnnnn-acactaataattgcacccgnnnnnnngttggtcaagtagccaagtga |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
32997653 |
gcagaagtgggaaaaaatgtgtctccgaatatcattactcttttattttttttacactaataattgcacccgtttttttgttggtcaagtagccaagtga |
32997752 |
T |
|
| Q |
119 |
ccgaaatttcattcgaataagtggaaatcctggattgaaaccccagtcggcggccactgtatattgcaatgttcctaccagctaagctcacataaactac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
32997753 |
ccgaaatttcattcgaataagtggaaatcctggattgaaaccccggtgggcggccactctatattgcaatgtccctaccaactaagctcacataaactac |
32997852 |
T |
|
| Q |
219 |
actcgctatttaaaactctgaaaaacattactaatttagtaattttcatatgannnnnnncttgttaagaagtaatctataatcattaatcacactcatg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32997853 |
actcgctatttaaaactctgaaaaacattactaatttagtaattttcatatgatttttttcttgttaagaagtaatctataatcattaatcacactcatg |
32997952 |
T |
|
| Q |
319 |
aaaacaagcattgttaattaatataaatattttgaagatctaagaccatcgtgcaatcataatttaaagcgttggaataatatacgaacaa |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32997953 |
aaaacaagcattgttaattaatataaatattttgaagatctaagaccatcgtgcaatcaaaatttaaagcgttggaataatatacgaacaa |
32998043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University