View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_24 (Length: 446)
Name: NF11851_low_24
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 41704284 - 41703834
Alignment:
| Q |
1 |
tacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttggatgtgtaagatttaattttttgttgttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704284 |
tacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttggatgtgtaagatttaattttttgttgttca |
41704185 |
T |
|
| Q |
101 |
cattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaaccaattagtaactacttt-taacaaactctaacaatatctaatgatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | || |||| | | |||||||||||||||||| |
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| T |
41704184 |
cattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaactaat-agtaaccaattagtaactacttttaacaatatctaatgatt |
41704086 |
T |
|
| Q |
200 |
ctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtcttcggattgtgtata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704085 |
ctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtcttcggattgtgtata |
41703986 |
T |
|
| Q |
300 |
gtgccaaggtaaacaagaggtggaatatcacttgttatgtat---------------------tatagtttcaaaactaagaactaacatgagttaattg |
378 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
41703985 |
gtgccaaggtaaacaagaggtggaatatcacttgttatgtattatacaagctaacatctgtattatactttcaaaactaagaactaacatgagttaattg |
41703886 |
T |
|
| Q |
379 |
ttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttat |
430 |
Q |
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| T |
41703885 |
ttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttat |
41703834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 41467192 - 41467280
Alignment:
| Q |
342 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttat |
430 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||| |
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| T |
41467192 |
tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttat |
41467280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 36467105 - 36467194
Alignment:
| Q |
342 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttat |
430 |
Q |
| |
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|||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||| |
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| T |
36467105 |
tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttat |
36467194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 33826671 - 33826623
Alignment:
| Q |
162 |
taactacttttaacaaactctaacaatatctaatgattctctaattata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
33826671 |
taactacttttaacaaactctaacaatatctatcaattcactaattata |
33826623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 10908990 - 10908947
Alignment:
| Q |
162 |
taactacttttaacaaactctaacaatatctaatgattctctaa |
205 |
Q |
| |
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||||||| |||||||||||||||||||||||||| | ||||||| |
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|
| T |
10908990 |
taactacatttaacaaactctaacaatatctaataaatctctaa |
10908947 |
T |
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