View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11851_low_25 (Length: 444)
Name: NF11851_low_25
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Complemental strand, 48014572 - 48014158
Alignment:
| Q |
12 |
gagatgaatccaatataaaagttgagtggatagccagagggtcctaattcggctcagagcgatgcattgtggttacattgtgcatccatgatgactcgag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48014572 |
gagatgaatccaatataaaagttgagtggatagccagagggtcctaattcggctcagagcgatacattgtggttacattgtgcatccatgatgactcgag |
48014473 |
T |
|
| Q |
112 |
catcactgtgcagattggaccatgttgtcttgttgggtgaggccatgaattagttcaaaacacttaaatatgtgagatgtttttattgagccactttggt |
211 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48014472 |
catcattgtgcatattggaccatgttgtcttgttgggtgaggccatgaattagttcaaaacacttaaatatgtgagatgtttttattgagccactttgat |
48014373 |
T |
|
| Q |
212 |
aataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcgtaacactcaacaagtgacaacaaatgtatttacaaattgctca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48014372 |
aataaaaaagtttaggcgagttggcattcatagattgacatatatcaggatttgtcttaacactcaacaagtgacaacaaatgtatttacaaatttctca |
48014273 |
T |
|
| Q |
312 |
ctatagaagtcattatcctgactattgtagttgaatgcacagtcttacgagacacaagtaaatttcttttcaatgaaatcaaccatcattgacacttcta |
411 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48014272 |
ctatagaagtcattatcctgattattgtagttgaatgcacagtcttacaagacacgagtaaatttcttatcaatgaaatcaaccatcattgacacttcta |
48014173 |
T |
|
| Q |
412 |
ttgagccactaaaat |
426 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48014172 |
ttgagccactaaaat |
48014158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University