View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_27 (Length: 436)
Name: NF11851_low_27
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 3788962 - 3789372
Alignment:
| Q |
17 |
atatttaacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaagtaataaacttttggagattatgtgatgactg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
3788962 |
atatttaacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaactaataaacttttgaagattatgtgatgactg |
3789061 |
T |
|
| Q |
117 |
gccaccttcttctatattcttaatagtcattttcttcattttcaaacacattgcctttatatcatcatcaccaactacttgatccaccttcttatttatc |
216 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
3789062 |
gccaccttcttctatattagtaatagtcattttcttcattttcaaacacatttcctttatgtcatcatcaccaactacttgatccaccttcttctttatc |
3789161 |
T |
|
| Q |
217 |
tcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789162 |
tcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaa |
3789261 |
T |
|
| Q |
317 |
atggccaacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789262 |
atggccaacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatat |
3789361 |
T |
|
| Q |
417 |
tttactctgtg |
427 |
Q |
| |
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|||||| |||| |
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|
| T |
3789362 |
tttactttgtg |
3789372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 23 - 427
Target Start/End: Complemental strand, 3801136 - 3800735
Alignment:
| Q |
23 |
aacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccacc |
122 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3801136 |
aacaacactaattcaaaacaacaag---taatagattataaacacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccacc |
3801040 |
T |
|
| Q |
123 |
ttcttctatattcttaatagtcattttcttcattttcaaacacattgcctttatatcatcatcaccaactacttgatccaccttcttatttatctcttgc |
222 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| | |
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| T |
3801039 |
ttcttctatattagtaatagtcattttcttcattttcaaacacattgcctttatgtcatcatcaccaactacttgatacaccttcttctttatctctttc |
3800940 |
T |
|
| Q |
223 |
cttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggcc |
322 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
3800939 |
cttgatatataaccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcaactgaaaatggcc |
3800840 |
T |
|
| Q |
323 |
aacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttact |
422 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
3800839 |
aacacaagaaaggtacaccagcatgtacaccttctatggtagaattccatccacaatgacttataaagcaagcaatggctggatgattcaatattttact |
3800740 |
T |
|
| Q |
423 |
ctgtg |
427 |
Q |
| |
|
|||| |
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|
| T |
3800739 |
ttgtg |
3800735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 241 - 416
Target Start/End: Original strand, 3767850 - 3768025
Alignment:
| Q |
241 |
tcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacac |
340 |
Q |
| |
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||||| || |||||||||| |||| ||||||||||||||||||||| || || || ||||||||||||| |||||||||||| |||||||||| || |
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| T |
3767850 |
tcatccttgtctaattcaaatccaaccttccacacatcacaaatatatgacttgttcgtaaattgatcagttgcaaatggccaacataagaaaggtatac |
3767949 |
T |
|
| Q |
341 |
cggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatat |
416 |
Q |
| |
|
| | || ||||||||| || || |||||||| ||||| ||||| ||||| ||||| || || |||||||||||||| |
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|
| T |
3767950 |
cagaatatacaccttctatagtagaattccaaccacaatgactaatgaaacaagctatagcaggatggttcaatat |
3768025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 235 - 416
Target Start/End: Original strand, 3780122 - 3780303
Alignment:
| Q |
235 |
ccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaag |
334 |
Q |
| |
|
||||| ||||| || |||| |||||||||| ||||||||||||||||| ||| || || || | |||||||||| ||| |||||||||||||||| |
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| T |
3780122 |
ccatcttcatccttgtctagttcaagtccaaccttccacacatcacaaacatatgacttgttcataaattgatcaccgtgaaacggccaacacaagaaag |
3780221 |
T |
|
| Q |
335 |
gtacaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatat |
416 |
Q |
| |
|
|||||||| || ||||||||| | ||| ||||||||||| || ||||| ||||| |||||||| || || ||||||||||| |
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|
| T |
3780222 |
gtacaccgctatatacaccttctacggtagaattccatccgcaatgactaatgaaacaagcaatagcagggtggttcaatat |
3780303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 338
Target Start/End: Original strand, 3755159 - 3755299
Alignment:
| Q |
198 |
atccaccttcttatttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattg |
297 |
Q |
| |
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|||||||||||| ||||||||| | ||| ||| ||||||| ||||| || || ||| | | |||| |||||| |||||||||||||| | || || |
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| T |
3755159 |
atccaccttcttctttatctctccctttgttattaatccattttcatccttttcaaatcccaatccaaccttccaaacatcacaaatatatgtcttgttc |
3755258 |
T |
|
| Q |
298 |
agaaattgatcagttaaaaatggccaacacaagaaaggtac |
338 |
Q |
| |
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| || ||||||| | ||||||||| ||||||| |||||||| |
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| T |
3755259 |
ataagttgatcactaaaaaatggcaaacacaacaaaggtac |
3755299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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