View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_29 (Length: 419)
Name: NF11851_low_29
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_29 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 3 - 402
Target Start/End: Original strand, 40928060 - 40928461
Alignment:
| Q |
3 |
ataaatgcttatgtataaatatagtttggctctgtttggatgctaatatataaatgattatggttttgattttccctttttagatataattaacaaagag |
102 |
Q |
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| T |
40928060 |
ataaatgcttatgtataaatatagtttggctctgttttgatgctaatatataaatgcttatggttttgattttccccttttagatataattaacaaagag |
40928159 |
T |
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| Q |
103 |
atttgtattttcccctttttgaattcaaccaggccaatccaaagagacaaagtacaagaagattgcaagcatagctgatactgatgtgtgtattgctcaa |
202 |
Q |
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| T |
40928160 |
atttgtattttcccctttttgaattcaaccaggccaatccaaagagacaaagtacaagaagattgcaagcatagttgatactgatgtgtgtattgctcaa |
40928259 |
T |
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| Q |
203 |
gtggatgct--atgtttttcagatgactacactacttgggggttgtgtgtttaaaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagt |
300 |
Q |
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| T |
40928260 |
gtggatgctggatgtttttcggatggctacactacttggaggctgcgtgtttaaaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagt |
40928359 |
T |
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| Q |
301 |
attgcgactgatccttgtatggcagaagcgcttggtgttaggtagtgtcttcaattggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatg |
400 |
Q |
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| T |
40928360 |
attgcgactgatccttgtatggaagaagcgcttggtgttaggtagtgtcttcaattggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatg |
40928459 |
T |
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| Q |
401 |
ct |
402 |
Q |
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| T |
40928460 |
ct |
40928461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 370
Target Start/End: Complemental strand, 5667057 - 5666933
Alignment:
| Q |
246 |
tgtgtttaaaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagtattgcgactgatccttgtatggcagaagcgcttggtgttaggtag |
345 |
Q |
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| T |
5667057 |
tgtgtttaaaaaccaatctggtgacattttgatggcagtgtgtacgaaagaaagtattgtgaccgatccttgtatggcagaagctcttgatgtgaggtgg |
5666958 |
T |
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| Q |
346 |
tgtcttcaattggcgcgtgatcaag |
370 |
Q |
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| T |
5666957 |
tgcctccggttggcgtgtgatcaag |
5666933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 3 - 402
Target Start/End: Complemental strand, 48505705 - 48505304
Alignment:
| Q |
3 |
ataaatgcttatgtataaatatagtttggctctgtttggatgctaatatataaatgattatggttttgattttccctttttagatataattaacaaagag |
102 |
Q |
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| T |
48505705 |
ataaatgcttatgtataaatatagtttggctctgttttgatgctaatatataaatgcttatggttttgattttccccttttagatataattaacaaagag |
48505606 |
T |
|
| Q |
103 |
atttgtattttcccctttttgaattcaaccaggccaatccaaagagacaaagtacaagaagattgcaagcatagctgatactgatgtgtgtattgctcaa |
202 |
Q |
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| T |
48505605 |
atttgtattttccccttttttaattcaaccaggccaatccaaagagacaaagtacaagaagattgcaagcataggtgatactgatgtgtgtattgcttaa |
48505506 |
T |
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| Q |
203 |
gtggatgct--atgtttttcagatgactacactacttgggggttgtgtgtttaaaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagt |
300 |
Q |
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| T |
48505505 |
gtggatgctggatgtttttcggatggctacactacttgggggttgtgtgtttaaaaacaattctggtgacatttcgatgattgtgtgcaagaaagaaagt |
48505406 |
T |
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| Q |
301 |
attgcgactgatccttgtatggcagaagcgcttggtgttaggtagtgtcttcaattggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatg |
400 |
Q |
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| T |
48505405 |
attgcgactgatccttgtatggtagaagcgcttggtgttagatagtgtcttcaattggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatg |
48505306 |
T |
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| Q |
401 |
ct |
402 |
Q |
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|| |
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| T |
48505305 |
ct |
48505304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 10268 - 10337
Alignment:
| Q |
331 |
cttggtgttaggtagtgtcttcaattggcgcgtgatcaaggtcttcaaaaattggaaatccaaactgatg |
400 |
Q |
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| T |
10268 |
cttggtgtaaggtgatgtctccaattggcgcgtgatcaaggactgcaaagagtggaaatccaaactgatg |
10337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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