View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_30 (Length: 414)
Name: NF11851_low_30
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 52140121 - 52140506
Alignment:
| Q |
7 |
agtggagaagcagagatagcaagaaataaacctggccaggaccatgatatgtaacttctccgccacgttcagtacgatgaatatgaaagggtggattttg |
106 |
Q |
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| T |
52140121 |
agtgaagaaacaaagataacaagaaataaacctggccaggaccatgatatgtaacttctccgccacgttcagtacgatgaatatgaaagggtggattttg |
52140220 |
T |
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| Q |
107 |
aatgtcgaaattgaggttgtcgttggaactagcagtacccaatgtaaaaacagaagggtgttgcaaaacaataagagtgtcgttgcaatctccttcattt |
206 |
Q |
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| T |
52140221 |
aatgtcgaaattgaggttgtcgttggaactagcagtacccaatgtaaaaacagaagggtgttgcaaaacaataagagtgtcgttgcaatctccttcattt |
52140320 |
T |
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| Q |
207 |
tgaatctgtgatttcttttgtttgacaatgtctttttgtaaagaccatgccacttcgtaagggataaattgttgatggaaatctatgagctcacagcttc |
306 |
Q |
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| T |
52140321 |
tgaatctgtgatttcttttgtttgacaatgtctttttgtaaagaccatgccacttcgtaagggataaattgttgatggaaatctatgagctcacagcttc |
52140420 |
T |
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| Q |
307 |
gtaaacattgcaccgttttggttcttcttctatggatattgattatgagagaggatgattttgaatgtgaattggagtggtggcgg |
392 |
Q |
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| T |
52140421 |
gtaaacattgcaccgttttggttcttcttctatggatattgaatatgagagaggatgattttgaatgtgaattggagtggtggcgg |
52140506 |
T |
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