View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_31 (Length: 414)
Name: NF11851_low_31
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 41721376 - 41721772
Alignment:
| Q |
1 |
accaatttcataatagtaactggcaaaataatagaatatcaatttcttcttttgacatatacaactcaatgctccacccagtactcgttgtcaaaacaaa |
100 |
Q |
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| T |
41721376 |
accaatttcataatagtaactggcaaaataatagaatatcaatttcttcttttgacatatacaactcaatgctccacccagtactcgttgtcaaaacaaa |
41721475 |
T |
|
| Q |
101 |
acaaaagctgtccataaccacttttttcatttatctttagctatgtcgtcttataaaaataccattcaaatcatttaaagcgagagaagtacattgtaaa |
200 |
Q |
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| T |
41721476 |
acaaaaactgtccataaccacttttttcatttatctttagctatgtcatcttataaaaataccattcaaatcatttaaagcgagagaagtacattgtaaa |
41721575 |
T |
|
| Q |
201 |
atacatattgtccattgaatcccnnnnnnnttccatcgtcaagtctaaaattacaacatggtatcgtatatgttcaagtgagattcaaacgaagctttaa |
300 |
Q |
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| T |
41721576 |
ataaatattgtccattgaatcccaaaaaaattccatcgtcaagtctaaaactacaacatggtatcgtatatgttcaagtgagattcaaacgaagctttaa |
41721675 |
T |
|
| Q |
301 |
ttacctctaaagttggtcagtagaggatgaaatgcacaactcaattggacaatctttcacaaaattaattagtatgttttcatcatatcactttcatg |
398 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41721676 |
ttacctctaaagtt-gtcagtagaggatgaaatgcacaactcaattggaccatctttcacaaaattaattagtatgttttcatcatatcactttcatg |
41721772 |
T |
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