View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_32 (Length: 414)
Name: NF11851_low_32
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 8941412 - 8941790
Alignment:
| Q |
18 |
aacaagatgctcaattgttaagggacgacaggagtatgtatttttatgtgtgtgtccaaatcttttgttcgaaccttgtgaacaagtgtgctatgtgacc |
117 |
Q |
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| T |
8941412 |
aacaagatgttcacttgttaagagaccacgggagtatgtatttttatatgtgtgtccatatcttttgttcgaaccttgtgaacaagtctgctatgtggcc |
8941511 |
T |
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| Q |
118 |
gctacaagatattgtcaaggcaagttcagttttatagtgtgttcaatgtatgaaaaataaggaagtggacaactagacttcaattgtagtgtatttgaat |
217 |
Q |
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| T |
8941512 |
gctacaagatattgtcaaggcaagttcagttttatagtgtgttcaatgtatgaaaaataaggaagtggacaactagaattcaattgtagtgtatttgaat |
8941611 |
T |
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| Q |
218 |
ttgacaataaaattgtttcgtgatcatgagattggacaaaatggaggaaaaatgatcgcaatccactaaaatcaaataatattgcgttgaatagccctaa |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
8941612 |
ttgacaataaaattg-ttcgtgatcatgagattggacaaaatggaggaaaaatgatcgcaatccattaaaatcaaataatattgtgttgaatagccctaa |
8941710 |
T |
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| Q |
318 |
acgcatgctaaatagtccaaaacgtgaaatcaaacatacattaagtagagaacgcgtaacaaaaatcatatctcaaatct |
397 |
Q |
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|||| || ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||| |||||| |
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| T |
8941711 |
acgcgtgttaaatagtccaaaacgtgaaaccaaacatatattaagtggagaacgcgtaacaaaaatcacatcttaaatct |
8941790 |
T |
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