View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_36 (Length: 407)
Name: NF11851_low_36
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 46864223 - 46864587
Alignment:
| Q |
18 |
aaacataattctgttttactgttttttgttttgttcaatcatagaaaatatgttttctgattttcttgttatatgatgtacaaattatagtggttggatg |
117 |
Q |
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| T |
46864223 |
aaacataattctgttttactgttttttgttttgttcaatcatagaaaatatgttttctgattttcttgttatatgatgtacaaattatagtggttgaatg |
46864322 |
T |
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| Q |
118 |
tatgttattttcattgctgcgtatgatattttcatgtttgttttgttattttgttcatacaataaatgctgcttcagtttaaaacagtgttgtcaaatat |
217 |
Q |
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| T |
46864323 |
tatgttattttcattgctgcgtat------------tttgttttgttattttgttcatacaataaatgctgcttcagtttaaaacagtgttgtcaaatat |
46864410 |
T |
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| Q |
218 |
cagaggtcaaatggcagatttgtagcaagtgccatggccaatttgtgaaggatggcgacgccatggtgttttatggtggctttaaattgcacatttggtt |
317 |
Q |
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| T |
46864411 |
cagcgttcaaatggcagatttgtagcaagcgccatggccaatttgtgaaggatggcgacgccatggtgttttatggtggctttaaattgcacatttggtt |
46864510 |
T |
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| Q |
318 |
ttccaccatccatcatcgttaacactggtttaaaattaatttaccacttgtctgtatgattagtgattactttatct |
394 |
Q |
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| T |
46864511 |
ttccaccatccatcatcgttaacactggtttaaaattaatttaccacttgtctgtatgattagtgattactttatct |
46864587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 32255305 - 32255347
Alignment:
| Q |
247 |
tgccatggccaatttgtgaaggatggcgacgccatggtgtttt |
289 |
Q |
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| T |
32255305 |
tgccatggccaatttgtgatagatagcgacgccatggtgtttt |
32255347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 40416761 - 40416724
Alignment:
| Q |
259 |
tttgtgaaggatggcgacgccatggtgttttatggtgg |
296 |
Q |
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| T |
40416761 |
tttgtgaaggatggcgacgacatggcgttttatggtgg |
40416724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 30750042 - 30750090
Alignment:
| Q |
248 |
gccatggccaatttgtgaaggatggcgacgccatggtgttttatggtgg |
296 |
Q |
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|||| |||||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
30750042 |
gccacggccaatttgtgaaagatggcggtgccatggtgttctatggtgg |
30750090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 396
Target Start/End: Original strand, 9151693 - 9151725
Alignment:
| Q |
364 |
cttgtctgtatgattagtgattactttatctct |
396 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
9151693 |
cttgtctgtttgattagtgattactttatctct |
9151725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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