View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_4 (Length: 796)
Name: NF11851_low_4
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 759; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 7 - 781
Target Start/End: Original strand, 1554888 - 1555662
Alignment:
| Q |
7 |
gcaatactcagacacaacattttcactatattatgatgaatgaacaatgaatatgaatttacacatataattacaacacttgtggctaagaatttgctta |
106 |
Q |
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| T |
1554888 |
gcaatactcagacacaacattttcactatattatgatgaatgaacaatgaatatgaatttacacatataattacaacacttgtggctaagaatttgctta |
1554987 |
T |
|
| Q |
107 |
ttatttgactaaattcgtgtggttttctttaagcattaacatcaattcaccatctttcatctccaatccagttatttttctctttaggccctgtaggacc |
206 |
Q |
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| T |
1554988 |
ttatttgactaaattcgtgtggtttactttaagcattaacatcaattcaccatctttcatctccaatccagttatttttctctttaggccctgtaggacc |
1555087 |
T |
|
| Q |
207 |
ttcctcaccatacagttccacaggaagctttctaaacaaattaccaaatgaacttctaagccttaaaggaagagaatttaaaatcttattaagataagtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |
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| T |
1555088 |
ttcctcaccatacagttccacaggaagctttctaaacaaattaccaaatgaacttctaagccttaaaggaagagaatttaaaatcttatcaagctcagtt |
1555187 |
T |
|
| Q |
307 |
tttgaatcataaacaattttaggaccccattgtctcatatactgcaaccattgaggctctttaacaacatcgcctaaatacgcagctgcaacgatctcat |
406 |
Q |
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| T |
1555188 |
tttgaatcataaacaattttaggaccccattgtctcatatactgcaaccattgaggctctttaacaacatcgcctaaatacgcagctgcaacgatctcat |
1555287 |
T |
|
| Q |
407 |
aatgaacactcgaatccacacgcaaattactacgtctagcatcattcctgataccaattccaagttttgacgatccttgtatgtaggttccaggatgagg |
506 |
Q |
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| T |
1555288 |
aatgaacactcgaatccacacgcaaattactacgtctagcatcattcctgataccaattccaagttttgacgatccttgtatgtaggttccaggatgagg |
1555387 |
T |
|
| Q |
507 |
gtaacttgcatgtccattttttgatgcatatacaatagctttattgccatcaatatactctaattcatatgcatcaacccatttaccaccactgtgctgt |
606 |
Q |
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| T |
1555388 |
gtaacttgcatgtccattttttgatgcatatacaatagctttattgccatcaatatactctaattcatatgcatcaacccatttaccaccactgtgctgt |
1555487 |
T |
|
| Q |
607 |
gagtaatatatactccaaagttctccagtgaagttacttattcgaagtgtgaaatgctcccaatcacctatatgttcaccaactttgctaaaagccatgc |
706 |
Q |
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| T |
1555488 |
gagtaatatatactccaaagttctccagtgaagttacttattcgaagtgtgaaatgctcccaatcacctatatgttcaccaactttgctaaaagccatgc |
1555587 |
T |
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| Q |
707 |
ttttcattccaaatttgagagtagaaggtccattgaaaggacaaaaaatccacattacaatgtctgtgaaagttc |
781 |
Q |
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| T |
1555588 |
ttttcattccaaatttgagagtagaaggtccattgaaaggacaaaaaatccacattacaatgtctgtgaaagttc |
1555662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 303 - 779
Target Start/End: Complemental strand, 29721172 - 29720696
Alignment:
| Q |
303 |
agtttttgaatcataaacaattttaggaccccattgtctcatatactgcaaccattgaggctctttaacaacatcgcctaaatacgcagctgcaacgatc |
402 |
Q |
| |
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||||||||||||||||| |||||| |||||||| | ||||||| |||||||||| | |||||| ||||||| ||| ||| |||||||||| | |
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| T |
29721172 |
agtttttgaatcataaataattttgggaccccactttctcataaactgcaaccaattaggctcagcgacaacattttctagatattcagctgcaacaact |
29721073 |
T |
|
| Q |
403 |
tcataatgaacactcgaatccacacgcaaattactacgtctagcatcattcctgataccaattccaagttttgacgatccttgtatgtaggttccaggat |
502 |
Q |
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| T |
29721072 |
tcataatggatactggagtccacgtacaaattactacgaacagcatcgttcctaatgccaagccctagttttgaagatccttggatgtacgttccaggac |
29720973 |
T |
|
| Q |
503 |
gagggtaacttgcatgtccattttttgatgcatatacaatagctttattgccatcaatatactctaattcatatgcatcaacccatttaccaccactgtg |
602 |
Q |
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| T |
29720972 |
gagggtaacttgcatgtccactttttgacgagtaaacaatggctttatttccatcaatataatccaagtcacatgtgtccatccattcaccgccactgtg |
29720873 |
T |
|
| Q |
603 |
ctgtgagtaatatatactccaaagttctccagtgaagttacttattcgaagtgtgaaatgctcccaatcacctatatgttcaccaactttgctaaaagcc |
702 |
Q |
| |
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|||||| | ||||| || | || ||||| | ||||||| ||| |||||||||||||||||||| ||||| | ||| || |||| ||||| |||| |
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| T |
29720872 |
ttgtgagaagtatatgctatagagctctccggcaaagttacatatacgaagtgtgaaatgctcccagtcaccaacatgctctccaatcttgctcaaaggt |
29720773 |
T |
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| Q |
703 |
atgcttttcattccaaatttgagagtagaaggtccattgaaaggacaaaaaatccacattacaatgtctgtgaaagt |
779 |
Q |
| |
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|| |||| ||||||| ||| | ||| | ||||| |||||||| ||||| ||||||||| |||||||||| ||||| |
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| T |
29720772 |
atattttttattccaactttcaaagtggctggtccgttgaaagggcaaaatatccacattgcaatgtctgtaaaagt |
29720696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 29721303 - 29721248
Alignment:
| Q |
172 |
atccagttatttttctctttaggccctgtaggaccttcctcaccatacagttccac |
227 |
Q |
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||||| |||||||||||||| ||||| |||||||||||||| ||||| || ||||| |
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| T |
29721303 |
atccaattatttttctcttttggcccagtaggaccttcctcgccatagagctccac |
29721248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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