View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11851_low_40 (Length: 367)
Name: NF11851_low_40
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 9298609 - 9298957
Alignment:
| Q |
1 |
agcgagagaaaaaggtgttgatattaaaattaagtgatggcaacataatttttaatacatatttttcaaaactcttttgaattgattatgtgggtctcgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9298609 |
agcgagagaaaaaggtgttgatattaaaattaaatgatggcaacataatttttaatacatatttttcaaaactcttttgaattgattatgtgggtatcgt |
9298708 |
T |
|
| Q |
101 |
aaatttggaggactcagtgtgaattttaatcgatcaaaaacattttgttgaaacatgtacttgaagatcaatgtgtttcttagcattatttatcatgtac |
200 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9298709 |
aaatttggaggattcactatgaattttaatcaatcaaaaacattttgttgaaacatgtacttgtagatcaatgtgtttcttagcattatttatcatgtac |
9298808 |
T |
|
| Q |
201 |
ttgaatagggagcttgcaatgcacatcatattcttggactttgaccgattcttaatcaatannnnnnnnnngcagcatattattttcattcttaatagca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9298809 |
ttgaatagggagcttgcaatgcacatcatattcttggactttgaccgattcttaatctata-tttttttttgcagcatattattttcatttttaatagca |
9298907 |
T |
|
| Q |
301 |
tagagatagatacaattatgtttctttatatcatcttctgtctactttat |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9298908 |
tagagatagatacaattatgtttctttatatcatcttctttctactttat |
9298957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University