View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_43 (Length: 359)
Name: NF11851_low_43
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 20 - 342
Target Start/End: Original strand, 45006881 - 45007201
Alignment:
| Q |
20 |
atttgatccgtttaaataaatcatatattaacttagacagatcccaactaatcagaccattgtcatctagtatcgatgaaaaagagtcaactaatgtatc |
119 |
Q |
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| T |
45006881 |
atttgatccgtttaaataaatcatatattaacttagacagatcccaactaatcagaccattgtcatctagtatcgatgaaaaagagtcaactaatgtatc |
45006980 |
T |
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| Q |
120 |
acaaagttctaaggcagaatatgtttgaaaaagatctatcctccgtttggtgaatgaaccgtgaataactctatataattaaaaataatgtactgtttaa |
219 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45006981 |
acaa-gttctaaggcagaatatgtttgaaaaagatctatcctccgtttggtgaatgaaccgtgaataactctatata-ttaaaaataatgtactgtttaa |
45007078 |
T |
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| Q |
220 |
atatagatcaaaagataagattgctttcacaaggactatagtaataaattttaattgttccatatccgagtttaatttaattggtatggacattacatta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45007079 |
atatagatcaaaagataagattgctttcacaaggactatagtaataaattttaattgttccatatccaagtttaatttaattggtatggacattacatta |
45007178 |
T |
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| Q |
320 |
tatattaaaggatatgacttgaa |
342 |
Q |
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|||||| ||| |||||||||||| |
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| T |
45007179 |
tatattgaagaatatgacttgaa |
45007201 |
T |
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