View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_45 (Length: 354)
Name: NF11851_low_45
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 340
Target Start/End: Complemental strand, 518873 - 518539
Alignment:
| Q |
6 |
agaagcaaaggggaggcaaaagcaaacacagcttaactttgattttggtgcacatgtattttgtacatttatgtttgaagaaacatttannnnnnngggt |
105 |
Q |
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| T |
518873 |
agaaacaaatgggaggcaaaagcaaacacagcttaactttgattttgatgcacatgtattttgtacatttatgtttgaagaaacatttatttttttgggt |
518774 |
T |
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| Q |
106 |
cttttcaaccttctgaatggttgcccatttcaattttcttcttgtttgtctgttataaataaaagagttgagattaaacttcatagacttccataaacta |
205 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
518773 |
cttttcaaccttctgaatggttgccgattacaattttcttcttgtttgtctgttataaataaaagagttgagattaaacttcatagacttccataaacta |
518674 |
T |
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| Q |
206 |
atgtttttctttattataaaaatatgaaattatttatctacatgcatgtttgtgatctaattttaagctttagtttcgttggatttagaaagtatcattt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
518673 |
atgtttttctttattataaaaatatgaaattatttatctacatgcatgtttgtgatctaattttaagctttagtttcgttggatttagaaagtatcattt |
518574 |
T |
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| Q |
306 |
agcaaccacctccacttgtatgacagatatgatat |
340 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
518573 |
agcaaccacctccacttgtatgacagatatgatat |
518539 |
T |
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