View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_47 (Length: 337)
Name: NF11851_low_47
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 31295104 - 31295418
Alignment:
| Q |
8 |
cagagagaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaattgca |
107 |
Q |
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| T |
31295104 |
cagagagaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaattgca |
31295203 |
T |
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| Q |
108 |
gattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagcaccttgaagtggagaatgcaggcaattactcct |
207 |
Q |
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| T |
31295204 |
gattggtgaatccaagtttgtgtttgaagcaaaaaccattcagaaaatagagcttctggtactaaccacattgaagtggagaatgcaagcaattactcct |
31295303 |
T |
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| Q |
208 |
ttctccttcattgaatatttcctttctaagattaatgatgataagagttcattg---aattctataattttgcaatgtactcaacttatatcaagcacca |
304 |
Q |
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| T |
31295304 |
ttctccttcattgaatatttcctttctaagattaatgatgataagagttcattgaataattctataattttgcaatgtactcaacttatatcaagcacca |
31295403 |
T |
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| Q |
305 |
ttaaaagtcctgact |
319 |
Q |
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| T |
31295404 |
ttaaaagtcctgact |
31295418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 31301144 - 31301236
Alignment:
| Q |
83 |
atgttcctcggattcttgaattgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagca |
175 |
Q |
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| T |
31301144 |
atgttcctccgaattttgatttgcagattagtgaatccaagtttgtgtttgaaggtaaaaccattcagaaaatggagcttctagtactgagca |
31301236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 31301998 - 31302067
Alignment:
| Q |
167 |
tactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattgaatatttcctttctaag |
237 |
Q |
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| T |
31301998 |
tactgagcacattgaagtggagaatgcaagcaattactcctttctccttcattgaat-tttcctttctaag |
31302067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 104 - 305
Target Start/End: Complemental strand, 46341967 - 46341763
Alignment:
| Q |
104 |
tgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagcaccttgaagtggagaatgcaggcaattac |
203 |
Q |
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| T |
46341967 |
tgcagattggtgaatccaagtttgtatttgaagctaaaaccatacagagaatggagcttctagtactcagcacattgaagtggagaatgcaagcaattac |
46341868 |
T |
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| Q |
204 |
tcctttctccttcattgaatatttcctttctaagatta---atgatgataagagttcattgaattctataattttgcaatgtactcaacttatatcaagc |
300 |
Q |
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||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||| ||||| || || |||||||||||||||||| |
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| T |
46341867 |
tccattctccttcattgaatgtttcctttctaagattaaagatgatgataagagttcattaagttcttcaatttcgcgatcaactcaacttatatcaagc |
46341768 |
T |
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| Q |
301 |
accat |
305 |
Q |
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||||| |
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| T |
46341767 |
accat |
46341763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 46342165 - 46342071
Alignment:
| Q |
14 |
gaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaattgcag |
108 |
Q |
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| T |
46342165 |
gaagagcttggacaatgcaattgttggctgtagcttgcttatctttggcagctaaagtagaggaaactgctgttcctcagcctcttgatttgcag |
46342071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 27699772 - 27699697
Alignment:
| Q |
156 |
agagcttctagtactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattgaatatttcctt |
231 |
Q |
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||||||||| |||||||||| ||||| ||||||||||| |||||||| |||||||||| |||||| | ||||||| |
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| T |
27699772 |
agagcttctgatactaagcacattgaactggagaatgcaagcaattacacctttctcctacattgactttttcctt |
27699697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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