View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_49 (Length: 332)
Name: NF11851_low_49
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 779208 - 779508
Alignment:
| Q |
16 |
acacttgttaacatttcccaaatttaaataatatgagaggagcaaaattgcatttaagccaataaaatacaatgtctaacaaaattttttgcattgttgt |
115 |
Q |
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| T |
779208 |
acacttgttaacatttcccaaatttaaataatatgagaggagcaaaattgcatttaagccaataaaatacaatgtctaacaaaattgtttgcattgttgt |
779307 |
T |
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| Q |
116 |
tgttggcgtgccttatataggtgttcaaggttggattcagaaaaatgctacactatttgctaccatgttgcgacgtttcacactgatgttgaatgggatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
779308 |
tgttggcgtgccttatataggtgttcaaggttggattcagaaaaatgctacactatttgctaccatgttgcgacgtttcacactgatgttgaatgggatg |
779407 |
T |
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| Q |
216 |
taagtcggagtgtgataaaatgcacaagttgaaaggtaagtttcacgttatcaattttatcttgtctccttacgaaatttgtagagattacatgcattaa |
315 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| |
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| T |
779408 |
taagtcggagtgtgataaaatgcacaggttgaaaggtaagtttcacgttatcaattttatcatgtctccttacgaaatttgtagagagcacacgcattaa |
779507 |
T |
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| Q |
316 |
t |
316 |
Q |
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| |
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| T |
779508 |
t |
779508 |
T |
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