View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_54 (Length: 313)
Name: NF11851_low_54
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 5948535 - 5948240
Alignment:
| Q |
1 |
tcgccaacttcaatagtaacatcacttggaagtcctgttgtacaaacccttaaattaaaa--caagacaagatcatggtcaattatccaataagtaaggg |
98 |
Q |
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| T |
5948535 |
tcgccaacttcaatagtaacatcacttggaagtcctgttgtacaaacccttaaattaaaaaacaagataagatcatggtcaattatccaataagtaaggg |
5948436 |
T |
|
| Q |
99 |
aatttgtagatacaattgagaaacctattctcactatccnnnnnnntcaaatgaaatttaaggttctattttgagatagggaacattaacaaaaacaaca |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5948435 |
aatttgtagatacaattgagaaacctattctcactatccaaaaaaatcaaatgaaatttaaggttctattttgagatagggaacattaacaaaaacaaca |
5948336 |
T |
|
| Q |
199 |
acaaaattacacacattgttaatgtcacatattatatataataatataaggatcaatgttgatatagagaaatgagtgccgaccatgtttggcctt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
5948335 |
acaaaattacacacattgttaatgtcacatattatatataataatataaggatcaatgttgatatagagaaatgagtgctgaccatgtttgacctt |
5948240 |
T |
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