View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_6 (Length: 715)
Name: NF11851_low_6
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 54986708 - 54986631
Alignment:
| Q |
20 |
ctgaattggtgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgctaaatgt |
97 |
Q |
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| T |
54986708 |
ctgaattggtgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgctaaatgt |
54986631 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 7884030 - 7883954
Alignment:
| Q |
21 |
tgaattggtgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgctaaatgt |
97 |
Q |
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| T |
7884030 |
tgaagtggtgtgtgaaagataatgatggaagagactattacagaaattctcttcattgtatttcctatgctaaatgt |
7883954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 550
Target Start/End: Complemental strand, 35959616 - 35959460
Alignment:
| Q |
391 |
ctcttatcatgataagcacttatgcataagttgcaaataagccatttctacataaaaggataaaataattaagttaaatt-gttttaaatatgatgtaag |
489 |
Q |
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| T |
35959616 |
ctcttatcatgataagagcttatgtataagct-cacataagctatttctatagaaaaggataaaata---aagttaaattatttttgtatatgctgtaag |
35959521 |
T |
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| Q |
490 |
ttgtttttataagttgaataaaaggaattatgaaaataagctcaaaaaaggttttgcaaat |
550 |
Q |
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| T |
35959520 |
ttgtttctataagctatattagagaatttttgaaaataagctgaaaaaagcttttgaaaat |
35959460 |
T |
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