View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_62 (Length: 275)
Name: NF11851_low_62
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 26096434 - 26096681
Alignment:
| Q |
20 |
cttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgag |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
26096434 |
cttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataattaccggtttcaatttactgag |
26096533 |
T |
|
| Q |
120 |
gttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccagga |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096534 |
gttagcatcgttcctcactgtcctgaaaagaactctgctgttcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccagga |
26096633 |
T |
|
| Q |
220 |
tgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgct |
267 |
Q |
| |
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|| || |||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
26096634 |
tgcgacggataaaagagttcctcgttgaaaacgacttggtcccatgct |
26096681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 26119721 - 26119968
Alignment:
| Q |
20 |
cttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26119721 |
cttggttcccattaacataatattcaacaactgctttcattcgcgtaagcttatcacggtggtaattcaagtgaataataaccggtttcaatttactgag |
26119820 |
T |
|
| Q |
120 |
gttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccagga |
219 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26119821 |
gttagcattgttcctcactgtcttgaaaagaactctgctattcataaaaagatatatatccatagttcttttagcagcatgaagcccgtcataaccagga |
26119920 |
T |
|
| Q |
220 |
tgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgct |
267 |
Q |
| |
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| |||||||| ||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
26119921 |
tatgatggatgaaagagttcctcgttgaaaacgacttggtcccatgct |
26119968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 26084159 - 26084405
Alignment:
| Q |
20 |
cttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgag |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
26084159 |
cttggttcccattaacatagtattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataataaccggtttcaatttactgag |
26084258 |
T |
|
| Q |
120 |
gttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccagga |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26084259 |
gttagcatcgttcctcactgtcctgaaaagaactctgctgttcataaaaagatatatatccatagttcttttagcagcatgaagcccgtcataaccagga |
26084358 |
T |
|
| Q |
220 |
tgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgc |
266 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| |||| |
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|
| T |
26084359 |
tgtgatggatgaaagagttcctcgttgaaaacggcttggtcccatgc |
26084405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 26126378 - 26126624
Alignment:
| Q |
20 |
cttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgag |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||||| |
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|
| T |
26126378 |
cttggttcccattaacatagtattcaacaactgctttcattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgag |
26126477 |
T |
|
| Q |
120 |
gttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccagga |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
26126478 |
tttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaagatatatatccatagttcttttagcagcatgaagcccgtcataaccagga |
26126577 |
T |
|
| Q |
220 |
tgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgc |
266 |
Q |
| |
|
|| || |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
26126578 |
tgcgacggataaaagagttcctcgttgaaaacgccttggtcccatgc |
26126624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 26064434 - 26064681
Alignment:
| Q |
20 |
cttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||| || ||||||||||||||||| |
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|
| T |
26064434 |
cttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacgtgaataattaccggtttcaatttactgag |
26064533 |
T |
|
| Q |
120 |
gttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccagga |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | |||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
26064534 |
tttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtacatatccatagtccttttagcagcatgaagcccgtcataaccagga |
26064633 |
T |
|
| Q |
220 |
tgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgct |
267 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
26064634 |
tgcgatggataaaagagttcctcgttaaaaacggcttggtcccatgct |
26064681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 26035786 - 26036032
Alignment:
| Q |
20 |
cttggttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgag |
119 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||| |
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|
| T |
26035786 |
cttgtttcccattgacataatattcgacaactgctttcattcgcggaagcttatcagggtggtaattcacgtgaacaattactggtttcaatttactgag |
26035885 |
T |
|
| Q |
120 |
gttagcatcgttcctcactgtcctgaaaagaactctgctattcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccagga |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||| |||||||| ||||| ||||||||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
26035886 |
gttagcatcgttcctcactgtcttgaaaagaactttgctgttcataaagagatacatatccatagttcttctagcagcatgaagcccttcataaccaggg |
26035985 |
T |
|
| Q |
220 |
tgtgatggataaaagagttcctcgttgaaaacaacttggtcctatgc |
266 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
26035986 |
tgtgacggataaaatagttcctcgttgaaaacggcttggtcccatgc |
26036032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 26075569 - 26075686
Alignment:
| Q |
24 |
gttcccattaacataatattcaacaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataactggtttcaatttactgaggtta |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
26075569 |
gttcccattaacataatattcaacaactgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataaccggtttcaatttactgaggtta |
26075668 |
T |
|
| Q |
124 |
gcatcgttcctcactgtc |
141 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26075669 |
gcatcgttcctcactgtc |
26075686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 6773247 - 6773326
Alignment:
| Q |
160 |
ttcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccaggatgtgatggataaaagagttc |
239 |
Q |
| |
|
||||||||||| || |||||||| ||||| || | ||||||||| || ||||||||||||||||| || ||||| ||||| |
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|
| T |
6773247 |
ttcataaaaaggtacatatccattgttctctttgcagcatgaagtccatcataaccaggatgtgaagggtaaaaaagttc |
6773326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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