View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_64 (Length: 269)
Name: NF11851_low_64
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 42506654 - 42506897
Alignment:
| Q |
11 |
cacagagcactgaaagttcaaaggcctttttaagcagtccatttcttctcttcgagaaagttacttgtctgtttgactcattttcgatgcgtttcatttg |
110 |
Q |
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| T |
42506654 |
cacaaagcactgaaagttcaaaggcctttttaagcagtccatttcttctctttgagaaagttacttgtctgtttgactcattttcgatgcgtttcatttg |
42506753 |
T |
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| Q |
111 |
agtttttcctctcaccattatgaactctctttgagggtaagatctgaactgaaacagacacaaaatggaatgagatctacttaaccaaaggttggaacac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42506754 |
agtttttcctctcaccattatgaactctctttgagggtaagatctgaactgaaaaagacacaaaatggaatgagatctagttaaccaaaggttggaacac |
42506853 |
T |
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| Q |
211 |
gagtggcgtgtttttatccaaaaatagaaagtggtgctgaaagt |
254 |
Q |
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| T |
42506854 |
aagtggcgtatttttatccaaaaatagaaagtggtgctgaaagt |
42506897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 12772328 - 12772217
Alignment:
| Q |
18 |
cactgaaagttcaaaggcctttttaagcagtccatttcttctcttcgagaaagttacttgtctgtttgactcattttcgatgcgtttcatttgagttttt |
117 |
Q |
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|||||| |||||||||||||| || | || |||||||||||||| ||||| ||||||||||| ||| | || || || || |||||||| || ||| |
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| T |
12772328 |
cactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttgtctacttgttgcgttctctatacgcttcatttgtgtcttt |
12772229 |
T |
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| Q |
118 |
cctctcaccatt |
129 |
Q |
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|||||||||||| |
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| T |
12772228 |
cctctcaccatt |
12772217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 12791188 - 12791077
Alignment:
| Q |
18 |
cactgaaagttcaaaggcctttttaagcagtccatttcttctcttcgagaaagttacttgtctgtttgactcattttcgatgcgtttcatttgagttttt |
117 |
Q |
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|||||| |||||||||||||| || | || |||||||||||||| ||||| ||||||||||| ||| | || || || || |||||||| || ||| |
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| T |
12791188 |
cactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttgtctacttgttgcgttctctatacgcttcatttgtgtcttt |
12791089 |
T |
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| Q |
118 |
cctctcaccatt |
129 |
Q |
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|||||||||||| |
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| T |
12791088 |
cctctcaccatt |
12791077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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