View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_66 (Length: 266)
Name: NF11851_low_66
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_66 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 18418371 - 18418118
Alignment:
| Q |
13 |
aaggccaaagtaggcatagaaagcacaaccacagccacagctacatcacctgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagag |
112 |
Q |
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| T |
18418371 |
aaggccaaagtaggcatagaaagcaaaaccacagccacagctacatcacctgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagag |
18418272 |
T |
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| Q |
113 |
ttccaaatcttgaaagaagaaattcaatcaagaaattgccaccaaaatcactttctctaccatcatcaccaccacttccaaccaaaacttcatcaacacc |
212 |
Q |
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| T |
18418271 |
tgccaaatcttgaaagaagaaattcaatcaagaaattaccaccaaaatcactttcactaccatcatcaccaccacttccaaccaaaacttcatcaacacc |
18418172 |
T |
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| Q |
213 |
accactttctccaaagctaaagtcaccaagaccaccagcaacaaagagagtcaa |
266 |
Q |
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| T |
18418171 |
accactttctccaaagctaaagtcaccaagaccaccagcaacaaagagagtcaa |
18418118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 26804769 - 26804663
Alignment:
| Q |
63 |
tgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagagttccaaatcttgaaagaagaaattcaatcaagaaattgccaccaaaatca |
162 |
Q |
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| T |
26804769 |
tgttgctagaatcaatggaaggccagtacttcaaccaacatgcaaccatgttccaaatcttgaaagaagaaactcaattaagaaatcaacaccaaaatca |
26804670 |
T |
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| Q |
163 |
ctttctc |
169 |
Q |
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| T |
26804669 |
ctttctc |
26804663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 32591282 - 32591176
Alignment:
| Q |
63 |
tgttgccaaaatcaatggaagacctgttcttcaaccaacttgtaacagagttccaaatcttgaaagaagaaattcaatcaagaaattgccaccaaaatca |
162 |
Q |
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|||||| | |||||||||||| || || ||||||||||| || ||| ||| ||||||||||||||||||| ||||| ||||||| |||| |||||| |
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| T |
32591282 |
tgttgctagaatcaatggaaggccagtacttcaaccaacatgcaaccatgtttcaaatcttgaaagaagaaactcaattaagaaatcaacaccgaaatca |
32591183 |
T |
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| Q |
163 |
ctttctc |
169 |
Q |
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| T |
32591182 |
ctttctc |
32591176 |
T |
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