View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11851_low_69 (Length: 250)
Name: NF11851_low_69
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_69 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 34493430 - 34493219
Alignment:
| Q |
6 |
agcacagagaagtcccacatcgttcaaaagtaagggaagcccgcaaagccttcttataaatatggaattcgttgctggaaattagcatgaacttaatgtt |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||| |
|
|
| T |
34493430 |
agcacagggaagtcccacatcgttcaaaagtaagggaagcacgcaaagccttcttataaatatggaattcgttgcttgaa-ttaccatgtgcttaatgtt |
34493332 |
T |
|
| Q |
106 |
tgaagtgaatgtgctcaacataccattcctcccacttcttctagctccatcttttatttaatgaaattctcttgcaaatatgaatttttctagtttaaga |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
34493331 |
tgaaatgaatgtgctcaacataccattctttccaattcctctagctccatcttttatttaatgaaattctcttgttaatatgaatttttctaatttaaga |
34493232 |
T |
|
| Q |
206 |
gagttaggagaat |
218 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
34493231 |
gagtttggagaat |
34493219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 34496955 - 34496882
Alignment:
| Q |
6 |
agcacagagaagtcccacatcgttcaaaagtaagggaagcccgcaaagccttcttataaatatggaattcgttg |
79 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |||||||||| |
|
|
| T |
34496955 |
agcacaggcaagtcccacatcgttcaaaagtatgggaagcacgcaaagcctttttataaatatcgaattcgttg |
34496882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 34482137 - 34482066
Alignment:
| Q |
9 |
acagagaagtcccacatcgttcaaaagtaagggaagcccgcaaagccttcttataaatatggaattcgttgc |
80 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| | ||||||||| |||||||||| ||||||||||| |
|
|
| T |
34482137 |
acagggaagtcccacatcgttcaaaagtatgggaagcactcaaagcctttttataaatatcgaattcgttgc |
34482066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 34492361 - 34492292
Alignment:
| Q |
9 |
acagagaagtcccacatcgttcaaaagtaagggaagcccgcaaagccttcttataaatatggaattcgtt |
78 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34492361 |
acagggaagtcccacatcgttcaaaggtatgggaagcatacaaagccttcttataaatatggaattcgtt |
34492292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 34488913 - 34488840
Alignment:
| Q |
8 |
cacagagaagtcccacatcgttcaaaagtaagggaagcccgcaaagccttcttataaatatggaattcgttgct |
81 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
34488913 |
cacagggaagtcccacatcgttcaaaagtatggaaagcgtacaaagcctttttataaatatctaattcgttgct |
34488840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University