View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_70 (Length: 250)
Name: NF11851_low_70
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_70 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 10391231 - 10391470
Alignment:
| Q |
11 |
agacatggcaaattaatgtcacgtcaaattaaaatataacatgacatgtcatataaacaccacatcacctaaaacaatgataatcataaattacagggac |
110 |
Q |
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| T |
10391231 |
agacatggcaaattaatgtcacgtcaaattaaaatataacatgacatgtcatataaacaccacatcacctaaaacaatgataatcataaattacaggg-- |
10391328 |
T |
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| Q |
111 |
atacatatatcaaaaagagaagnnnnnnntgaaatga----atatagcataaactaaccttattataaggcccaaaaatataaataaccctaannnnnnn |
206 |
Q |
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| T |
10391329 |
--acatatatcaaaaagagaagaaaaaaatcaaatgaatatatatagcataaactaaccttattataaggcccaaaaatataaataaccctaaatttttt |
10391426 |
T |
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| Q |
207 |
actcaacaaataacactagagtttctaattgttttcttaataat |
250 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10391427 |
actcgacaaataacactagagtttctaattgttttcttaataat |
10391470 |
T |
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