View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_71 (Length: 250)
Name: NF11851_low_71
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 52623569 - 52623328
Alignment:
| Q |
1 |
cagaacaggagagcaaggtacgttaattaattaatttatgggtccatttcattgatcttataactatgttgttacttttgtctaccattaatttttcttc |
100 |
Q |
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| T |
52623569 |
cagaacaggagagcaaggtacgttaattaattaatttatgggtccatttcattgatcttataactatgttgttacttttgtctaacattaatttttcttc |
52623470 |
T |
|
| Q |
101 |
atattatctgggtttcataactgaatatatcacctatttaattttat--------ttatgttgttgactaagttatcgattgtggatgtaggtagtagta |
192 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52623469 |
atattatctgggtttcgtaactgaatatatcacctatttaattttatttatttatttatgttgttgactaagttatcgattgtggatgtag---gtagta |
52623373 |
T |
|
| Q |
193 |
gtattatagtatttaatttccattagtttataaattgttgtattt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52623372 |
gtattatagtatttaatttccattagtttataaattgttgtattt |
52623328 |
T |
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