View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11851_low_73 (Length: 249)
Name: NF11851_low_73
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11851_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 352008 - 352242
Alignment:
| Q |
3 |
ctatgttagtatcatgnnnnnnngaatatattggcagctaagaatgtatcagaacttgaacagattgctattgttcttcgaagccgtatttagtctataa |
102 |
Q |
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| T |
352008 |
ctatgttagtatcatgaaaaaaagaatatattggcagctaagaatgtatcagaacttgaacagattgctattgttcttcgaagccgtaattagtctataa |
352107 |
T |
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| Q |
103 |
tgttgttaaattctgatgtgaaattgttagttctccttgacaaatggctcaaagctaattttcaacatcattttattgtgaaacagaatctgcactccag |
202 |
Q |
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| T |
352108 |
tgttgttaaattctgatgcgaaattgttagttctccttgacaaatggctcaaagctaattttcaacatcattttattgtgaaacagaatctgcactccag |
352207 |
T |
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| Q |
203 |
cccttttcattctgaaatttcataaagtcacccct |
237 |
Q |
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| T |
352208 |
cccttttcattctgaaatttcataaagtcacccct |
352242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 10578782 - 10578874
Alignment:
| Q |
32 |
attggcagctaagaatgtatcagaacttgaacagattgctattgttcttcgaagccgtatttagt----ctataatgttgttaaattctgatg |
120 |
Q |
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| T |
10578782 |
attggcagctaagattgtaacagaacttgaacagattgctattgttcttcgaacccgtatttatttacgctataatgttgtcaaattctgatg |
10578874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 10578981 - 10579028
Alignment:
| Q |
190 |
atctgcactccagcccttttcattctgaaatttcataaagtcacccct |
237 |
Q |
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| T |
10578981 |
atctccactccagcccttttcattctgaaattccataaagtcacccct |
10579028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 10578899 - 10578967
Alignment:
| Q |
127 |
tgttagttctccttgacaaatggctcaaa-gctaattttcaacatcattttattgtgaaacagaatctg |
194 |
Q |
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| T |
10578899 |
tgttagttctccttgacaaatgactcaaattttaatattcgacatgattttattgtgaaacagaatctg |
10578967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 24577324 - 24577434
Alignment:
| Q |
127 |
tgttagttctccttgacaaatggctcaaagct-aattttcaacatcattttattgtgaaacagaatctgcactccagcccttttcattctgaaatttcat |
225 |
Q |
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| T |
24577324 |
tgttagttctccttgggaaatgactcaaattttaatattcgacatgattttattgtgaaacagaatctccactccaacccttttcattctgaaattccat |
24577423 |
T |
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| Q |
226 |
aaagtcacccc |
236 |
Q |
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| T |
24577424 |
aaagtcacccc |
24577434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 24577073 - 24577160
Alignment:
| Q |
33 |
ttggcagctaagaatgtatcagaacttgaacagattgctattgttcttcgaagccgtatttagtctataatgttgttaaattctgatg |
120 |
Q |
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|||||| |||||| |||| |||||||| |||| ||||||||||||| | | ||||||||| ||||||||||||| || |||||||| |
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| T |
24577073 |
ttggcaactaagattgtaacagaactttaacatattgctattgttcatggtgcccgtatttactctataatgttgtcaacttctgatg |
24577160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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