View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11851_low_9 (Length: 688)

Name: NF11851_low_9
Description: NF11851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11851_low_9
NF11851_low_9
[»] chr6 (3 HSPs)
chr6 (581-672)||(496920-497010)
chr6 (13-105)||(500208-500300)
chr6 (295-355)||(500984-501044)
[»] chr1 (1 HSPs)
chr1 (295-358)||(12574404-12574467)
[»] chr5 (3 HSPs)
chr5 (14-93)||(23103791-23103866)
chr5 (11-45)||(23072730-23072764)
chr5 (487-519)||(29458360-29458392)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 581 - 672
Target Start/End: Complemental strand, 497010 - 496920
Alignment:
Q  581 taaagttgtgttttaccacaaagtagtgtaaaccgattggaaaatatccaaatcatacatgttctagatttaagatgtaaagatacaaaaac 672  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  497010 taaagttatgttttaccacaaagtagtgtaaaccgattggaaaatatccaaatcatacatgttctagatttaagatgt-aagatacaaaaac 496920  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 500208 - 500300
Alignment:
Q  13 gagacataggtttggtggtgtgagaaaccatttagaggatgaatgttgaagaagaatagggtttggtgcttgttcaaaaaacaatagggtttg 105  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||| |||||||||||    
T  500208 gagacttaggtttggtcgtgtgagaaaccatttggaggatgaatgtagaagaagattagggtttggtgcttgtttaaaaaagaatagggtttg 500300  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 501044 - 500984
Alignment:
Q  295 aacaaagttaagcatatctagcaagattcgagatggaatatcaacaatttaaatctctata 355  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  501044 aacaaagttaagcatatctagcaatattcgagatggaaaatcaacgatttaaatctctata 500984  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 12574467 - 12574404
Alignment:
Q  295 aacaaagttaagcatatctagcaagattcgagatggaatatcaacaatttaaatctctatacat 358  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  12574467 aacaaatttaagcatatctagcaagattcgagatggaaaatgaacaatttaaatctctatacat 12574404  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 23103791 - 23103866
Alignment:
Q  14 agacataggtttggtggtgtgagaaaccatttagaggatgaatgttgaagaagaatagggtttggtgcttgttcaaaaaa 93  Q
    |||||||||| |||||||||||||||| |||| ||||||| |    ||||||||||||||||||||||||||||||||||    
T  23103791 agacataggtctggtggtgtgagaaactatttggaggatgta----gaagaagaatagggtttggtgcttgttcaaaaaa 23103866  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 23072730 - 23072764
Alignment:
Q  11 cagagacataggtttggtggtgtgagaaaccattt 45  Q
    |||||||||||||| ||||||||||||||||||||    
T  23072730 cagagacataggttcggtggtgtgagaaaccattt 23072764  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 487 - 519
Target Start/End: Complemental strand, 29458392 - 29458360
Alignment:
Q  487 attacattcgatctcttccattttctcaaatta 519  Q
    ||||||||| |||||||||||||||||||||||    
T  29458392 attacattcaatctcttccattttctcaaatta 29458360  T

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