View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11852_high_2 (Length: 320)
Name: NF11852_high_2
Description: NF11852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11852_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 45559630 - 45559918
Alignment:
| Q |
18 |
attcatgtcccactggacatcagttcctccttccataaactcaacatggattccatctcattcaacaccatgctcatggaagggtgtcaaatgcaaccct |
117 |
Q |
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| T |
45559630 |
attcatgtcccactggacatcagttcctccttccataaactcaacatggattccatctcattcaacaccatgctcatggaagggtgtcaaatgcaaccct |
45559729 |
T |
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| Q |
118 |
tccactcaccgtgtagtctctctcaacctttcctcttttaacattcatgctccattacgacctgaaatttctaattgcacacacctcaactatttagacc |
217 |
Q |
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| T |
45559730 |
tccactcaccgtgtagtctctctcaacctttcctcttgtaacattcatgctccattacgacctgaaatttctaattgcacacacctcaactacttagacc |
45559829 |
T |
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| Q |
218 |
tttcttctaattactttaccggccaaatacctcactcattctctaacctccacaaactcacctatctcagcctttctactaatctactc |
306 |
Q |
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| T |
45559830 |
tttcttctaattactttaccggtcaaatacctcactcattctctaacctccacaaactcacctatctcagcctttctactaatctactc |
45559918 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 46388350 - 46388273
Alignment:
| Q |
28 |
cactggacatcagttcctccttccataaactcaacatggattccatctcattcaacaccatgctcatggaagggtgtc |
105 |
Q |
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||||||||||| | ||||||| |||||||||| |||| |||| ||||| || |||||||| ||||||||| ||||| |
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| T |
46388350 |
cactggacatcggctcctcctcccataaactctacataaattcattctcactccacaccatgttcatggaagtgtgtc |
46388273 |
T |
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