View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11852_low_1 (Length: 558)
Name: NF11852_low_1
Description: NF11852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11852_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 15228758 - 15228234
Alignment:
| Q |
18 |
aagctagacagtcgccactgcgctaattcgacaagagattcgtgcatcgatctagtttatcgtgaccaattgaaaatctttgtacattttgatatctact |
117 |
Q |
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| T |
15228758 |
aagctagacagtcgccactgcgctaattcgacaagagattcgtgcatcgatctagtttatcgtgaccaattgaaaatctttgtacattttgatatctact |
15228659 |
T |
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| Q |
118 |
tatctaatttggtggcatatgttgtaggatcacaacttgcgaagtcgtcgacggagaagattgatgctgctgatgatgaaaagaggacagcaacctattg |
217 |
Q |
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| T |
15228658 |
tatctaatttggtggcatatgttgtaggatcacaacttgcaaagtcgtcgacggagaagattgatgctgctgatgatgaaaagaggacagcaacctattg |
15228559 |
T |
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| Q |
218 |
tataattgaaggggatcttctccagtactacaaatcattcaagggacacctagctttaataccagttggagaaggatgtgagatgaaatggtgtgctgag |
317 |
Q |
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| T |
15228558 |
tataattgaaggggatcttctccagtactacaaatcattcaagggacacctagctttaataccagttggagaaggatgtgagatgaaatggtgtgctgag |
15228459 |
T |
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| Q |
318 |
tatgttaaagttagtaatgatattcctgatccaagtattgtcaaagattttgcagtcaagaacttcattgaggtggatgagtatgttcaatcacttgctg |
417 |
Q |
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| T |
15228458 |
tatgttaaagttagtaatgatattcctgatccaagtattgtcaaaaattttgcagtcaagaacttcattgaggtggatgagtatgttcaatcacttgctg |
15228359 |
T |
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| Q |
418 |
catagaagtttaatgagttgaatgacaagctagtattttaataaatgtattgttacataatgtggttgaataatggaaccgtttcctatttaatgtgatc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15228358 |
catagaagtttaatgagttgaatgacaagctagtattttaataaatgtattgttacataatgtggttgaataatggaaccgtttcctatttaatgtgatc |
15228259 |
T |
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| Q |
518 |
tatgtagtaatgagcttgtcctttg |
542 |
Q |
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| T |
15228258 |
tatttagtaatgagcttgtcctttg |
15228234 |
T |
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