View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11852_low_3 (Length: 264)
Name: NF11852_low_3
Description: NF11852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11852_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 609495 - 609281
Alignment:
| Q |
18 |
aaaatggagaggtatgagaggggaagtagaagaaggagatgcaaagaaggtaaacatgaaaacaatgaaaggttgggaaattggggtgaacctctttggc |
117 |
Q |
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| T |
609495 |
aaaatggagaggtatgagaggggaagtagaagaaggagatgcaaagaaggtaaacatgaaaacaatgaaaggttgggaaattggggtgaacctctttggc |
609396 |
T |
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| Q |
118 |
ttgcattggcaacttcttgaaaactctcatttggatctttgtctctctatctattatttaacaatgatcatgtaaaacaannnnnnnnagaatttttagg |
217 |
Q |
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| T |
609395 |
ttgcattggcaacttcttgaaaactctcatttg------------------aattatttaacaatgatcatgtaaaacaattttttttagaatttttagg |
609314 |
T |
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| Q |
218 |
tatctgttctttttcttctgaatatcccctttg |
250 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
609313 |
tatctgttctttttcttctgaatatcccttttg |
609281 |
T |
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