View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_high_15 (Length: 531)
Name: NF11853_high_15
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 230 - 523
Target Start/End: Original strand, 8734423 - 8734716
Alignment:
| Q |
230 |
ttataaataacttgacaataatttgtgaacgatacaagatgagattattattacctgctgctctaactgactgcgagaccaatatttcattggcttgaaa |
329 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8734423 |
ttataaataacatgacaataatttgtgaacgatacaagatgagattattattacctgctgctctaactgactgcgagaccaatatttcattggcttgaaa |
8734522 |
T |
|
| Q |
330 |
tccaatgaaatcatagactccatcaccagcggcatctaagggaaccctgacatcgtatctataaacagccgtgtgccttgatggataccaagttatgtct |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8734523 |
tccaatgaaatcatagactccatcaccagcggcatctaagggaaccctgacatcgtatctataaacagccgtgtgccttgatggataccaagttatgtct |
8734622 |
T |
|
| Q |
430 |
gcaaactcatacttctttgcatgttctatgtacacattttcaatatcattatcatcagtgaaattgaatgcaatgcttcttttgaacctatgct |
523 |
Q |
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| T |
8734623 |
gcaaactcatacttctttgcatgttctatgtacacattttcaatatcattatcatcagtgaaattgaatgcaatgcttcttttgaacctatgct |
8734716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 22 - 523
Target Start/End: Original strand, 8715393 - 8715900
Alignment:
| Q |
22 |
tgatcatcagtgtcactttaataataatttctcccttcccagagttttttaaaaaagttgcttattacttacta----agaacaacatgactacgaggtc |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||| ||||||| ||||| |||||| |
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| T |
8715393 |
tgatcatcagtgtaactttaataataatttctcccttttcaaagttttttaaaaaagttggttattacttgctatctaagaacaatatgacagtgaggtc |
8715492 |
T |
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| Q |
118 |
atcacgccagtaacaggagttggacccacacccttgctgggtatgagctaactccttacatgctatgccaacctccattggcaaaaccttat---cttta |
214 |
Q |
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||| ||||||| || |||||| |||||| |||||| ||||||||||||||||||| || ||| ||||||| | ||||||||||| |||| ||||| |
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| T |
8715493 |
ctcaagccagtaccaagagttgaacccacgcccttgtggggtatgagctaactccttgcacgcttggccaaccgcaattggcaaaactttattatcttta |
8715592 |
T |
|
| Q |
215 |
attggttattgctagttataaataacttgacaataatttgtgaacgatacaagatgagattattattacctgctgctctaactgactgcgagaccaatat |
314 |
Q |
| |
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||||||||||||| | || | || ||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||| || |||||||| |
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| T |
8715593 |
attggttattgcttgctaacagaaatatgaaaataattttagaacagcacaagatgagatcattattacctgctgctctaactgactgagataccaatat |
8715692 |
T |
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| Q |
315 |
ttcattggcttgaaatccaatgaaatcatagactccatcaccagcggcatctaagggaaccctgacatcgtatctataaacagccgtgtgccttgatgga |
414 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
8715693 |
ttcgttggcttgaaatccaatgaaatcatagactccgtcaccagaggcatctaagg-aaccctgaaatcgtatctataatcagctgtgtgccttgatgga |
8715791 |
T |
|
| Q |
415 |
taccaagttatgtctgcaaactcatacttctttgcatgttctatgtacacattttcaatatcattatcatcagtgaaattgaatgcaatgcttcttttga |
514 |
Q |
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|||||||||||||| ||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
8715792 |
taccaagttatgtccacaaactcatacttttttacatgttatatgtacacgttttcaatatcattatcatcagtgagattgaatgttatgcttcttttga |
8715891 |
T |
|
| Q |
515 |
acctatgct |
523 |
Q |
| |
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| ||||||| |
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| T |
8715892 |
atctatgct |
8715900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 8734234 - 8734426
Alignment:
| Q |
18 |
aaaatgatcatcagtgtcactttaataataatttctcccttcccagagtttt-ttaaaaaagttgcttattacttactaagaacaacatgactacgaggt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8734234 |
aaaatgatcatcagtgtcactttaataataatttctcccttcccagagtttttttaaaaaagttgcttattacttactaagaacaacatgactacgagat |
8734333 |
T |
|
| Q |
117 |
catcacgccagtaacaggagttggacccacacccttgctgggtatgagctaactccttacatgctatgccaacctccattggcaaaaccttat |
209 |
Q |
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| T |
8734334 |
cgtcacgccagtaacaggagttggacccacacccttgctgggtatgagctaactccttacatgctatgccaacctccattggcaaaaccttat |
8734426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 242 - 454
Target Start/End: Complemental strand, 20428692 - 20428487
Alignment:
| Q |
242 |
tgacaataatttgtgaacgatacaagatgagattatta-ttacctgctgctctaactgactgcgagaccaatatttcattggcttgaaatccaatgaaat |
340 |
Q |
| |
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|||||||||||| |||| |||| ||||||||| |||| |||||| ||||||||| |||||| |||| |||||||||||| ||||||||||||||||| | |
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| T |
20428692 |
tgacaataattttagaacaatactagatgagatcattagttacctactgctctaaatgactgagagatcaatatttcatttgcttgaaatccaatgaagt |
20428593 |
T |
|
| Q |
341 |
catagactccatcaccagcggcatctaagggaaccctgacatcgtatctataaacagccgtgtgccttgatggataccaagttatgtctgcaaactcata |
440 |
Q |
| |
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|||||||||||||| ||| |||||| ||||||||||| | |||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |
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| T |
20428592 |
catagactccatcatcagaggcatc-aagggaaccctaaaatcgtatctataaacagctgtgtgcc-------atatgaagttatgtctgcaaactcata |
20428501 |
T |
|
| Q |
441 |
cttctttgcatgtt |
454 |
Q |
| |
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|||||||| ||||| |
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| T |
20428500 |
cttctttgaatgtt |
20428487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 360 - 519
Target Start/End: Original strand, 8712238 - 8712398
Alignment:
| Q |
360 |
ggcatctaagggaaccctgacatcgtatctataaacagccgtgtgccttgatggataccaagttatgtctgcaaactcatacttctttgcatgttctatg |
459 |
Q |
| |
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|||||||||||||||||| | || | ||| |||||| |||| ||| ||| ||||||| |||||||| ||| |||||||||||||||||| |||||| |
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| T |
8712238 |
ggcatctaagggaaccctaaaattgcatccgcaaacagttgtgtatcttaatgaataccaatttatgtctacaatctcatacttctttgcatgctctatg |
8712337 |
T |
|
| Q |
460 |
tacacattttcaatatcattatcatcagtgaaattgaatgcaat--gcttcttttgaaccta |
519 |
Q |
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||||||||||| |||||| ||||||||| ||||||||||| || |||||||||||||||| |
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| T |
8712338 |
tacacattttc-atatcactatcatcagcgaaattgaatgttattcgcttcttttgaaccta |
8712398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 406 - 454
Target Start/End: Complemental strand, 10031916 - 10031868
Alignment:
| Q |
406 |
cttgatggataccaagttatgtctgcaaactcatacttctttgcatgtt |
454 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
10031916 |
cttgatggataccaagttatgtctgcaaaatcatacttctttgaatgtt |
10031868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 10031998 - 10031912
Alignment:
| Q |
242 |
tgacaataatttgtgaacgatacaagatgagattatta-ttacctgctgctctaactgactgcgagaccaatatttcattggcttga |
327 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||| |||| |||||||||||||||| || | |||||||||||||||||||||||| |
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| T |
10031998 |
tgacaataattttagaacaatactagatgagatcattagttacctgctgctctaaatgttcgagagaccaatatttcattggcttga |
10031912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 455
Target Start/End: Original strand, 8732026 - 8732081
Alignment:
| Q |
400 |
gtgtgccttgatggataccaagttatgtctgcaaactcatacttctttgcatgttc |
455 |
Q |
| |
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||||| ||| ||| |||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
8732026 |
gtgtgtcttaatgaataccaagttatgtctacaacctcatacttctttgcatgttc |
8732081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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