View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11853_high_20 (Length: 503)
Name: NF11853_high_20
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 51583716 - 51584193
Alignment:
| Q |
18 |
aaatttatcaactcatctttcctcattattcgtcataagccattgcatcctgggtgtcaaaatattcataattatcttctnnnnnnnnnnnnnnnnnctc |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51583716 |
aaattgatcaactcatctttcctcattattcgtcataagccattgcatcctgggtgtcaaaatattcataattatcttcatcatcatcatcatcatcctc |
51583815 |
T |
|
| Q |
118 |
ttcatggtcgttaactttaggtaaattgttaatttcaatggaatgtagtaccagctcattagcctcttttatatcttcctctgtttttgctaaagataga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51583816 |
ttcatggtcgttaactttaggtaaattgttaatttcaatggaatgtagtaccagctcattagcctcttttatatcttcctctgtttttgctaaagataga |
51583915 |
T |
|
| Q |
218 |
agaatatttttagctttctgatcaggaagaagtccattcaatgccatttctttaaaccagttaacagcactgtcaaaatctccatttttcccatgtgcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51583916 |
agaatatttttagctttctgatcaggaagaagtccattcaatgccatttctttaaaccagttaacagcactgtcaaaatctccatttttcccatgtgcat |
51584015 |
T |
|
| Q |
318 |
ccatgatagtggtcaaaattgtttgattggccttgataccccgcccaagcatttcctcatacttttccattaccttctcaatatcatttgccttagcata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51584016 |
ccatgatagtggtcaaaattgtttgattggccttgataccccgcccaagcatttcctcatacttttccattaccttctcaatatcatttgccttagcata |
51584115 |
T |
|
| Q |
418 |
cccttttattaaggttccataagtgacaacattaggttcaaaaccatcttgtatcaatcttttgaaaaacttctctgc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51584116 |
cccttttattaaggttccataagtgacaacattaggttcaaaaccatcttgtatcaatcttttgaaaaacttctctgc |
51584193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University