View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_high_24 (Length: 446)
Name: NF11853_high_24
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Original strand, 2614182 - 2614604
Alignment:
| Q |
6 |
cgcaatgaaaacacacaaagaatgagggaaacccagataagaaaggtgtttttagaagccatattaattaatttggtttaggccactgatcagtatgatc |
105 |
Q |
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| T |
2614182 |
cgcaatgaaaaaacacaaagaatgagggcaacccagataagaaaggtgtttttagaagccatatta--taatttggtttaggccactgatcagtatgatc |
2614279 |
T |
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| Q |
106 |
aagacatcctaatttataaccattatctgggtattgcttgccttccaagcatttattattacgtagtttcgcatgactttgccaaccaattgtttagnnn |
205 |
Q |
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| T |
2614280 |
aagacatcctaatttataaccattatctgggtattgcttgccttccaagcatttattattacgtagtttcgcatgactttgccaaccaattgtttagttt |
2614379 |
T |
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| Q |
206 |
nnnngtcaataaaacagtgatagcaaactttctgtctttttcatgcatgcttccgcgtaaactaagtcaaatatatagtaaatgtcaatgacacggtctt |
305 |
Q |
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| T |
2614380 |
ttttgtcaataaaacagtgatagcaaagtttctgtctttttcatgcatgcttccgcgtaaactaagtcaaatatatagtaaatgtcaatgacacggtcct |
2614479 |
T |
|
| Q |
306 |
tttggtataaggtatcttccgcacacaattgaaagactaattttaagtatgattaattgaagattaatgcattcttattgaaactcgaatccaaggtcat |
405 |
Q |
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| T |
2614480 |
tttggtataaggtatcttctgcacacaattgaaagactaattttaagtatgattaattgaagactaatgcattcttaatgaaactcgaatccaaggtcat |
2614579 |
T |
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| Q |
406 |
tggtttaattagaagagatatgtat |
430 |
Q |
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| T |
2614580 |
tagtttaattagaagagatatgtat |
2614604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 2610337 - 2610397
Alignment:
| Q |
8 |
caatgaaaacacacaaagaatgagggaaacccagataagaaaggtgtttttagaagccata |
68 |
Q |
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|||||||||||||||||||||||| |||||||| ||||| || | |||||||||||||| |
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| T |
2610337 |
caatgaaaacacacaaagaatgagagaaacccaaataagtgagattattttagaagccata |
2610397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 2610557 - 2610608
Alignment:
| Q |
238 |
tgtctttttcatgcatgcttccgcgtaaactaagtcaaatatatagtaaatg |
289 |
Q |
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| T |
2610557 |
tgtctttttcccgcatgcttccacgtaaaccaagtcaaatatatcgtaaatg |
2610608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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