View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11853_high_36 (Length: 251)
Name: NF11853_high_36
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_high_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 9837169 - 9837396
Alignment:
| Q |
14 |
tttgtccttaaatataagttctattttaaatttcgaaattcattattatttataagataaattattcaacttagtaatattcatatacaatgtgtgtaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9837169 |
tttgtccttaaatataagttctattttaaatttcgaaattcattattatttataagataaattattcaacttagtaatattcatatacaatgtgtgtaca |
9837268 |
T |
|
| Q |
114 |
ttatttatatttctaacttttcttaatatttgtggaaaatgctcaaaagggttagtataaaagacnnnnnnnaccaaataaaatttgttatggtactctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9837269 |
ttatttatatttctaacttttcttaatatttgtggaaaatgctcaaaagggttagtataaaagactttttttaccaaataaaatttgttatggtactctt |
9837368 |
T |
|
| Q |
214 |
ttcccaaataacaacggagcctcctatg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9837369 |
ttcccaaataacaacggagcctcctatg |
9837396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 9848047 - 9848274
Alignment:
| Q |
14 |
tttgtccttaaatataagttctattttaaatttcgaaattcattattatttataagataaattattcaacttagtaatattcatatacaatgtgtgtaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9848047 |
tttgtccttaaatataagttctattttaaatttcgaaattcattattatttataagataaattattcaacttagtaatattcatatacaatgtgtgtaca |
9848146 |
T |
|
| Q |
114 |
ttatttatatttctaacttttcttaatatttgtggaaaatgctcaaaagggttagtataaaagacnnnnnnnaccaaataaaatttgttatggtactctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9848147 |
ttatttatatttctaacttttcttaatatttgtggaaaatgctcaaaagggttagtataaaagactttttttaccaaataaaatttgttatggtactctt |
9848246 |
T |
|
| Q |
214 |
ttcccaaataacaacggagcctcctatg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9848247 |
ttcccaaataacaacggagcctcctatg |
9848274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University