View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11853_high_38 (Length: 245)
Name: NF11853_high_38
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 38038481 - 38038224
Alignment:
| Q |
1 |
cagggaaaggggacacagcaagaaactgattttccctaagcaaaacctaaacaaacaaacaag--------------------attattacatttaagca |
80 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38038481 |
cagggaaaggggacacagcaagaaagtgattttccctaagcaaaacctaaacaaacaaacaagtcagaagaagctacaacaagattattacatttaagca |
38038382 |
T |
|
| Q |
81 |
gcgttctaaatgcgagtgtcccaaagtgattcttgctgaactttaccactcttcaagagttccgcgatttcctctggagggttcaaaccaagcttcacag |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38038381 |
gcgttctaaatgcgagtgtcccaaagtgattcttgctgaactttaccactcttcaagagttccgcgatttcctccggagggttcaaaccaagcttcacag |
38038282 |
T |
|
| Q |
181 |
cacgctccaagcgtgccagcctcgtcatccccatacaaggcccatactgcatgttcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38038281 |
cacgctccaagcgtgccagcctcgtcatccccatacaaggcccatacttcatgttcat |
38038224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University