View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_high_45 (Length: 238)
Name: NF11853_high_45
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 65 - 217
Target Start/End: Original strand, 40592597 - 40592746
Alignment:
| Q |
65 |
gattggtgttcaaacctcaactcctcctctttatgtataagtttctaatgattattgtcgatttgtctatctacgaacaaaaaatataagttaaaattgt |
164 |
Q |
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| T |
40592597 |
gattggtgttcaaacctcaactcc---tctttatgtataagtttctaatgattattgtcgatttgtctatctccgaacaaaaaatataagttaaaattgt |
40592693 |
T |
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| Q |
165 |
ctcatttaatctatttcacgatagtacagtcacaaactgtatgactactcctc |
217 |
Q |
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| T |
40592694 |
ctcatttaatctatttcacgatagtacagtcataaactgtatgactactcctc |
40592746 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 578643 - 578690
Alignment:
| Q |
75 |
caaacctcaactcctcctctttatgtataagtttctaatgattattgtc |
123 |
Q |
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| T |
578643 |
caaacctcaactcctc-tatttatgtatgagtttctaatgattattgtc |
578690 |
T |
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