View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11853_high_5 (Length: 827)

Name: NF11853_high_5
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11853_high_5
NF11853_high_5
[»] chr1 (5 HSPs)
chr1 (19-819)||(8813150-8813934)
chr1 (425-615)||(235886-236076)
chr1 (458-610)||(229858-230010)
chr1 (433-676)||(250568-250811)
chr1 (428-540)||(4440661-4440773)
[»] chr3 (13 HSPs)
chr3 (423-592)||(9341533-9341699)
chr3 (451-551)||(9403059-9403159)
chr3 (479-585)||(9370461-9370567)
chr3 (451-551)||(9421298-9421398)
chr3 (481-554)||(9348838-9348911)
chr3 (427-594)||(9344639-9344803)
chr3 (458-595)||(9494028-9494165)
chr3 (424-531)||(9625696-9625803)
chr3 (464-536)||(9433723-9433795)
chr3 (413-529)||(9645575-9645691)
chr3 (427-531)||(9654582-9654686)
chr3 (451-512)||(9441015-9441076)
chr3 (424-581)||(9613061-9613218)
[»] chr2 (1 HSPs)
chr2 (431-554)||(20693476-20693599)
[»] chr5 (1 HSPs)
chr5 (491-584)||(18571864-18571957)
[»] scaffold0038 (2 HSPs)
scaffold0038 (424-551)||(20300-20427)
scaffold0038 (424-551)||(20444-20571)
[»] chr6 (9 HSPs)
chr6 (424-551)||(28177179-28177306)
chr6 (424-551)||(28219802-28219929)
chr6 (429-519)||(7052957-7053047)
chr6 (424-551)||(28177035-28177162)
chr6 (424-551)||(28219946-28220073)
chr6 (433-519)||(7026618-7026704)
chr6 (449-551)||(28133077-28133179)
chr6 (424-551)||(28132933-28133060)
chr6 (430-519)||(7042334-7042423)
[»] scaffold0455 (1 HSPs)
scaffold0455 (424-551)||(10839-10966)


Alignment Details
Target: chr1 (Bit Score: 660; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 19 - 819
Target Start/End: Original strand, 8813150 - 8813934
Alignment:
Q  19 ccaaggtcaatcaattgaagcaaataaataatagtagcctctaaaaacatgaatcctcactaaagcgaatactcaagcacttattattaaagaatgcacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8813150 ccaaggtcaatcaattgaagcaaataaataatagtagcctctaaaaacatgaatcctcactaaagcgaatacttaagcacttattattaaagaatgcacc 8813249  T
Q  119 agatttatcaagtgtcggatattctctcatgttcaacttgctttgtcttcactcttatttttcaatacagctggaactaatgaatgaccttatcaacata 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813250 agatttatcaagtgtcggatattctctcatgttcaacttcctttttcttcactcttatttttcaatacagctggaactaatgaatgaccttatcaacata 8813349  T
Q  219 nnnnnnnnnnnnnngatttgatcttggtttcaaataaaaattgaatttgaagatattattttgatgattcaagttaatagcacgatttctttacttatgg 318  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8813350 tttttttgttttttgatttgatcttggtttcaaataaaaattgaatttgaagatattattttgatgattca-gttaatagcacgatttctttacttatgg 8813448  T
Q  319 tgtgtcaaaatgcttaaatgtcgtgtttaagatgactaaataagatcatgaactgtagcaggttatgactgtggctctgattgttcatccacagccatgg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8813449 tgtgtcaaaatgcttaaatgtcgtgtttaagatgactaaataagatcatgaaatgtagcaggttatgactgtggctctgattgttcatccacagccatgg 8813548  T
Q  419 aggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813549 aggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttg 8813648  T
Q  519 taccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattcccgctcaacattgattccatcaca 618  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||              |||||||||||||||||    
T  8813649 taccaattggcattcttcttccatcccaaatcaccaccgtaacattttaaccatcaaattcccact-at--------------acattgattccatcaca 8813733  T
Q  619 aataaaactccattctctgatctctccaaacacggtttcttcctcatcaaatcaccaccacaatccctaattcatccttggttgactaaaataacacaaa 718  Q
    || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813734 aacaaaactccattctctgatctctccaaacacggtttcttcatcatcaaatcaccaccacaatccctaattcatccttggttgactaaaataacacaaa 8813833  T
Q  719 actccactggaaaaatcaaacactacctcccactccgccgacattcctcaccttctccttctcccgtctttgatttcaacaacttctctctcattcatct 818  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813834 actccactggaaaaatcaaacactacctcccattccgccgacattcctcaccttctccttctcccgtctttgatttcaacaacttctctctcattcatct 8813933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 425 - 615
Target Start/End: Complemental strand, 236076 - 235886
Alignment:
Q  425 aggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaa 524  Q
    ||||||| |||||| |||||||| |||| ||||||||||| |||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  236076 aggcagattggtctaaactgccaaaggatcttctgaatcttatatcaaaacaaattgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaa 235977  T
Q  525 ttggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattcccgctcaacattgattccatc 615  Q
    |||||||||||||||||| || |||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  235976 ttggcgttcttcttccatcccgaatcaccaccgtgacatgttaaccatcaatttcccactcatcaaattcccactcaacattggttccatc 235886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 458 - 610
Target Start/End: Complemental strand, 230010 - 229858
Alignment:
Q  458 tgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccg 557  Q
    ||||||||||||||  || | ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  230010 tgaatctgatatcgtgacgaatcgacaacgaaatcgatatcattcgcttccgatcaatctgttccaattggcgttcttcttccatcccaaatcaccaccg 229911  T
Q  558 taacattttaaccatcaaattcccactcatcaaattcccgctcaacattgatt 610  Q
    | |||| ||||||||||||||||||| | || ||| ||| |||||||||||||    
T  229910 tgacatgttaaccatcaaattcccacccttccaatccccactcaacattgatt 229858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 433 - 676
Target Start/End: Original strand, 250568 - 250811
Alignment:
Q  433 tggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgtt 532  Q
    ||||||||||| ||| | || ||| |||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||| ||| ||||||||||||    
T  250568 tggtctgaacttccaaacgaccttttgaatctgatatcgcaactattcgacaacaaaatcgatctcaatagcttccgatcaatatgttccaattggcgtt 250667  T
Q  533 cttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattcccgctcaacattgattccatcacaaataaaactccatt 632  Q
    || ||||||| |||||||| |||||||||||||| ||  |  | ||||||||| ||  |  |||  ||||||||||||||||||  || |   ||  |||    
T  250668 ctgcttccatcccaaatcagcaccgtaacatttttacacttcagttcccactcttccgacccccattcaacattgattccatcaacaacatctctgaatt 250767  T
Q  633 ctctgatctctccaaacacggtttcttcctcatcaaatcaccac 676  Q
    |  | | ||||| |||||||||||||||||||||||| ||||||    
T  250768 ccgtaacctctctaaacacggtttcttcctcatcaaaccaccac 250811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 428 - 540
Target Start/End: Complemental strand, 4440773 - 4440661
Alignment:
Q  428 cagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattg 527  Q
    |||||||||||  ||| ||| ||||||||||  |||||||||| |||| | |||||   ||| ||||||||||||| |||||||||| |||| |||  ||    
T  4440773 cagactggtcttcactcccaaaggagcttctacatctgatatcccaacgactcgacgttgaactcgatctcattcgtttccgatcaacttgttccacatg 4440674  T
Q  528 gcgttcttcttcc 540  Q
    ||| |||||||||    
T  4440673 gcgctcttcttcc 4440661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 423 - 592
Target Start/End: Complemental strand, 9341699 - 9341533
Alignment:
Q  423 ggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacc 522  Q
    ||||||| |||||||| |||| ||| |||| || || | |||||||||||||| | | |||| |||||||||||||||||| || ||||| |||||| ||    
T  9341699 ggaggcaaactggtctcaactcccaaaggatctactcactctgatatcgcaacgaattgacaccgaaatcgatctcattcgatttcgatccatttgttcc 9341600  T
Q  523 aattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaat 592  Q
    |||||||||||||| ||||| |||||||||||   |||||| ||| || |||||||||||||| ||||||    
T  9341599 aattggcgttcttcctccatcccaaatcacca---taacatcttacccttcaaattcccactcctcaaat 9341533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 451 - 551
Target Start/End: Complemental strand, 9403159 - 9403059
Alignment:
Q  451 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatc 550  Q
    ||||||||||||||||||||||||| | ||  || ||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| | |||||    
T  9403159 gagcttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcttcttccatccgaaatc 9403060  T
Q  551 a 551  Q
    |    
T  9403059 a 9403059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 479 - 585
Target Start/End: Complemental strand, 9370567 - 9370461
Alignment:
Q  479 tcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaatt 578  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| ||||||||||||||||| | | | | || | ||||||||||    
T  9370567 tcgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatcttcaaacttcacccatcaaatt 9370468  T
Q  579 cccactc 585  Q
    |||||||    
T  9370467 cccactc 9370461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 451 - 551
Target Start/End: Complemental strand, 9421398 - 9421298
Alignment:
Q  451 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatc 550  Q
    ||||||||||||||||||||||||| | ||  || ||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||||| | |||||    
T  9421398 gagcttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcatcttccatccgaaatc 9421299  T
Q  551 a 551  Q
    |    
T  9421298 a 9421298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 9348911 - 9348838
Alignment:
Q  481 gacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcacca 554  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||||    
T  9348911 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcacca 9348838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 427 - 594
Target Start/End: Complemental strand, 9344803 - 9344639
Alignment:
Q  427 gcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaatt 526  Q
    ||||| ||||||||||| ||| |||| ||||| ||||| ||||||||||   ||||||| ||| | |||||||||||||| |||||  ||||| ||||||    
T  9344803 gcagattggtctgaactcccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcattcgctttcgatctgtttgttccaatt 9344704  T
Q  527 ggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattc 594  Q
    |||  ||||||||||| || ||||| ||   |||||||||| || | || ||||||||| ||||||||    
T  9344703 ggcactcttcttccatccccaatcatca---taacattttaccctttaagttcccactcctcaaattc 9344639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 458 - 595
Target Start/End: Original strand, 9494028 - 9494165
Alignment:
Q  458 tgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccg 557  Q
    ||||||||||||| ||   | ||||||  |||||||||||||||||||| |||||| | |||  ||||||||| ||||||||||||| ||| ||||| |     
T  9494028 tgaatctgatatcacagggaatcgacactgaaatcgatctcattcgctttcgatcagtctgttgcaattggcgctcttcttccattcgaaagcaccatct 9494127  T
Q  558 taacattttaaccatcaaattcccactcatcaaattcc 595  Q
    |||||||||| || || |||| |||||| |||||||||    
T  9494128 taacattttacccttcgaatttccactcttcaaattcc 9494165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 531
Target Start/End: Original strand, 9625696 - 9625803
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||| |||||||||||| || ||| |||||||| ||||| |||| ||||||  | | |||| ||||||||||||||| ||||| |||||  ||||| |||    
T  9625696 gaggtagactggtctgatctcccaaaggagcttttgaatatgatttcgcaaagaattgacatcgaaatcgatctcatacgctttcgatctgtttgttcca 9625795  T
Q  524 attggcgt 531  Q
    ||||||||    
T  9625796 attggcgt 9625803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 536
Target Start/End: Complemental strand, 9433795 - 9433723
Alignment:
Q  464 tgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttc 536  Q
    |||| ||||||| | ||||||  ||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  9433795 tgatttcgcaacgaatcgacactgaaattgatctcattcgcttccgatcagtttgttcccattggcgttcttc 9433723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 413 - 529
Target Start/End: Original strand, 9645575 - 9645691
Alignment:
Q  413 ccatggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatc 512  Q
    |||||| || |||||||||||||||||| || ||  |||||||||||||| |||| ||  ||| | |||||| ||||||| || | |||||||| |||||    
T  9645575 ccatggcggcggaggcagactggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcaatatgattcgctttcgatc 9645674  T
Q  513 aatttgtaccaattggc 529  Q
      ||||| |||||||||    
T  9645675 ggtttgttccaattggc 9645691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 531
Target Start/End: Original strand, 9654582 - 9654686
Alignment:
Q  427 gcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaatt 526  Q
    |||||||||||||| || ||  |||||||||||||| |||| ||  ||| | |||||| |||||||||| | |||||||| |||||  ||||| ||||||    
T  9654582 gcagactggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcgatatgattcgctttcgatcggtttgttccaatt 9654681  T
Q  527 ggcgt 531  Q
    |||||    
T  9654682 ggcgt 9654686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 512
Target Start/End: Original strand, 9441015 - 9441076
Alignment:
Q  451 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatc 512  Q
    |||||||| |||||||||||||||| | ||||| | ||| ||||||||||||| || |||||    
T  9441015 gagcttctaaatctgatatcgcaacgaatcgacgatgaactcgatctcattcgttttcgatc 9441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 581
Target Start/End: Original strand, 9613061 - 9613218
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||| ||||||||||||||| ||  | || ||||||||||| ||||| |||    | ||||||||| |||| || ||||  || |||||||||||| | |    
T  9613061 gaggtagactggtctgaacttcctaaagaacttctgaatctcatatcacaatgcattgacaacgaactcgaccttattcattttcgatcaatttgttcaa 9613160  T
Q  524 attggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattccc 581  Q
      ||||| ||||| ||||| |||||||||||  ||||||| | | || ||||||||||    
T  9613161 cgtggcgctcttcctccatcccaaatcaccatagtaacatctcatccttcaaattccc 9613218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 431 - 554
Target Start/End: Original strand, 20693476 - 20693599
Alignment:
Q  431 actggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcg 530  Q
    ||||||||||||||||  |||| |||||||||||||||||  ||||  |||||| |||| |||||||||||||||| |||||| ||||| ||||||||||    
T  20693476 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcg 20693575  T
Q  531 ttcttcttccattccaaatcacca 554  Q
    |||||| ||||| |||||||||||    
T  20693576 ttcttcctccatcccaaatcacca 20693599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 491 - 584
Target Start/End: Complemental strand, 18571957 - 18571864
Alignment:
Q  491 tcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccact 584  Q
    |||||||||||||||||||||   ||||| |||| ||||||||||| ||||| |||||||| ||   |||||||||| || |||||||||||||    
T  18571957 tcgatctcattcgcttccgattggtttgtcccaaatggcgttcttcctccatcccaaatcatcattctaacattttacccttcaaattcccact 18571864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 551
Target Start/End: Original strand, 20300 - 20427
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||||  || |||||  ||| | |||    
T  20300 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattcca 20399  T
Q  524 attggcgttcttcttccattccaaatca 551  Q
    ||||||  |||||||| | |||||||||    
T  20400 attggcactcttcttcaactccaaatca 20427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 551
Target Start/End: Complemental strand, 20571 - 20444
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || |||||  || ||  ||    
T  20571 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttca 20472  T
Q  524 attggcgttcttcttccattccaaatca 551  Q
    |||| |  |||||||| |||||||||||    
T  20471 attgacactcttcttctattccaaatca 20444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 551
Target Start/End: Complemental strand, 28177306 - 28177179
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || ||||   || || |||    
T  28177306 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatatgttcgttcca 28177207  T
Q  524 attggcgttcttcttccattccaaatca 551  Q
    |||| |  ||||||||||||||||||||    
T  28177206 attgacactcttcttccattccaaatca 28177179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 551
Target Start/End: Original strand, 28219802 - 28219929
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||||  || |||||  ||| | |||    
T  28219802 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattcca 28219901  T
Q  524 attggcgttcttcttccattccaaatca 551  Q
    ||||||  |||||||| | |||||||||    
T  28219902 attggcactcttcttcaactccaaatca 28219929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 519
Target Start/End: Complemental strand, 7053047 - 7052957
Alignment:
Q  429 agactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 519  Q
    |||||||||| |||| |||  ||||||||| ||||||||||| |||| | | ||| | ||||||||| |||||||||||||||||| ||||    
T  7053047 agactggtctaaactcccaacggagcttctcaatctgatatcacaacgaattgacgatgaaatcgatttcattcgcttccgatcaacttgt 7052957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 551
Target Start/End: Original strand, 28177035 - 28177162
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||||||| |||| | | || ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||| | || |||||  ||||| |||    
T  28177035 gaggcagattggtatcagcttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatttgttttcgatctgtttgttcca 28177134  T
Q  524 attggcgttcttcttccattccaaatca 551  Q
    ||||||  |||||||| | |||||||||    
T  28177135 attggcactcttcttcaactccaaatca 28177162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 424 - 551
Target Start/End: Complemental strand, 28220073 - 28219946
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || |||||  || ||  ||    
T  28220073 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttca 28219974  T
Q  524 attggcgttcttcttccattccaaatca 551  Q
    |||| |  |||||||| |||||||||||    
T  28219973 attgacactcttcttctattccaaatca 28219946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 519
Target Start/End: Complemental strand, 7026704 - 7026618
Alignment:
Q  433 tggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 519  Q
    |||||| |||| |||  ||||||||| |||||||||||||||| | || || | ||| |||||||||||| |||||||||| |||||    
T  7026704 tggtctaaactcccaacggagcttctcaatctgatatcgcaacgaatctacgaagaagtcgatctcattcacttccgatcagtttgt 7026618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 551
Target Start/End: Complemental strand, 28133179 - 28133077
Alignment:
Q  449 aggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaa 548  Q
    |||| ||||| ||||||||||| |||| | ||| ||| ||| |||||| |||||| ||  ||||| |||||  ||||||||  |||||||||||||||||    
T  28133179 aggatcttctcaatctgatatcacaacgactcggcaatgaactcgatcacattcgtttttgatcagtttgtttcaattggcactcttcttccattccaaa 28133080  T
Q  549 tca 551  Q
    |||    
T  28133079 tca 28133077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 551
Target Start/End: Original strand, 28132933 - 28133060
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||| | ||| ||| ||| | ||||||||||| |  |||||  ||||| |||    
T  28132933 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttcca 28133032  T
Q  524 attggcgttcttcttccattccaaatca 551  Q
    ||| | | |||||||| | |||||||||    
T  28133033 atttgagctcttcttcaactccaaatca 28133060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 430 - 519
Target Start/End: Complemental strand, 7042423 - 7042334
Alignment:
Q  430 gactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 519  Q
    ||||||||| |||| |||  ||||||||| ||||||||||| |||| | |||| || ||| | ||||||||||| || | ||||||||||    
T  7042423 gactggtctaaacttccaacggagcttctcaatctgatatcacaacgaatcgataatgaagttgatctcattcgatttcaatcaatttgt 7042334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 551
Target Start/End: Original strand, 10839 - 10966
Alignment:
Q  424 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 523  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||| | ||| ||| ||| | ||||||||||| |  |||||  ||||| |||    
T  10839 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttcca 10938  T
Q  524 attggcgttcttcttccattccaaatca 551  Q
    ||| | | |||||||| | |||||||||    
T  10939 atttgagctcttcttcaactccaaatca 10966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University