View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_1 (Length: 1100)
Name: NF11853_low_1
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 974; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 974; E-Value: 0
Query Start/End: Original strand, 23 - 1081
Target Start/End: Original strand, 4440541 - 4441599
Alignment:
| Q |
23 |
ctccaccctattggaactttgtaggactattgcttctcttgttgccaatgctattgtgccaggaacaattaacatcctatctaattctttagactaatta |
122 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
4440541 |
ctccaccctattggaactttgtaggattattgcttctcttgttgccaatgctattgtgccaggaataattaacatcctatctaattctttagacaaatta |
4440640 |
T |
|
| Q |
123 |
aattcaacaaattcaggcctgttataagtgcacctactaacatagacaaattgagtgacggtattgtaacaacgatatcaggtgattctactggcggtgt |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
4440641 |
aattcaacaaattcaggcctgttataagtgcacctactaacatagacaaattgagtgacggtattgtaaaaacgatgtcaggtggttctactggcggtgt |
4440740 |
T |
|
| Q |
223 |
gcaatcagctagtgattagatgaggatgttgtctctatctatgacgcattcttcctaattggtgtgtctttgacttttttgtatatgctaactgtagagc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440741 |
gcaatcagctagtgattagatgaggatgttgtctctatctatgacgcattcttcctaattggtgtgtctttgacttttttgtatatgctaactgtagagc |
4440840 |
T |
|
| Q |
323 |
ttaaggtctcatgtgttttagatagctcgacaaaatgttcaaatttcaattggtgtgcgcttagaaaattttgcaaacatatgtgatgtatttcccaatc |
422 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
4440841 |
ttaaggtctcatgtgttttagatagctcgacaaaatgttcaaatttcaattggtgtgcgcttagaaaattttgtaaacatatgtgatgtattttccaatc |
4440940 |
T |
|
| Q |
423 |
tagttaagcaaatgctgacacggtgc--atgacatagggctacctgaaaatcaatcatagaatcttggttagatgaaatcagagcgtgctaaaaatcact |
520 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4440941 |
tagttaagcaaatgctgacacggtgcatatgacatagggctacctgaaaatcaatcatagaatcttggttagatgaaatcagagcttgctaaaaatcact |
4441040 |
T |
|
| Q |
521 |
ccgtgatttctttgtatagtcaacaccatcgaatcagagaaaaactgtagttgtagatatgtggagagcagaggttctgtcgtagcaaaggttaggactt |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441041 |
ccgtgatttctttgtatagtcaacaccatcgaagcagagaaaaactgtagttgtagatatgtggagagcagaggttctgtcgtagcaaaggttaggactt |
4441140 |
T |
|
| Q |
621 |
cagtggatacttcttcattgatatccatcgcaaatatctgaatatttttaaggagcaattaatctcctaaatctatgaaacacttacacacgccctgtca |
720 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441141 |
cagtggatacttcttcattgatatccatcgcaaatatctgaatatttttaaggagcaattaatctcctaaatctatgaaacacttacacacgccctgtca |
4441240 |
T |
|
| Q |
721 |
accttgataatactttgcaaatatgtaagcaattgaatgtaaccaaatatgttagtgtctgtgttgttgtccgacaccaaagtgtatatgacttcaatct |
820 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4441241 |
accttgataatactttgcaaatatgtaagcaattgaatgtaacc-aatatgttagtgtc-gtgttgttgtccgacaccaaagtgtatatgacttcaatct |
4441338 |
T |
|
| Q |
821 |
taagtatcagtgctaaatagttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacac |
920 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441339 |
taagtatcagtcctaaatagttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacac |
4441438 |
T |
|
| Q |
921 |
caataagtttaccattgctgaagatgctgctaattgatgtcctctgtaacatggaagtggcttttgtaaatgcactcctctatggctgcccaaacatcga |
1020 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4441439 |
caataagtttaccatcgctgaagatgctgctaattgatgtcctcggtaacgtggaagtggcttttgtaaatgcactcctctatggctgcccaaacatcga |
4441538 |
T |
|
| Q |
1021 |
agctttggaccttaactttttatctgatagcttggagaatgtttgcctcccagcttccttg |
1081 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4441539 |
agctttggaccttcactttttatctgatagcttggagaatgtttgcctcccagcttccttg |
4441599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 816 - 1081
Target Start/End: Complemental strand, 8383383 - 8383119
Alignment:
| Q |
816 |
aatcttaagtatcagtgctaaatagttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcac |
915 |
Q |
| |
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||||||| |||||||||||||||||||||||| |||||||||| || ||| ||||||||| |||| |||| || |||||||||| || | |||||| |
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| T |
8383383 |
aatcttatgtatcagtgctaaatagttatgaa-tgtgatataaaataattcgtttgttccacagtctttgcaatgcaattcatctaaacatacaaagctt |
8383285 |
T |
|
| Q |
916 |
tacaccaataagtttaccattgctgaagatgctgctaattgatgtcctctgtaacatggaagtggcttttgtaaatgcactcctctatggctgcccaaac |
1015 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||||||| || || || | |||||||| || | || |||||||| || | ||||||||||||| |
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| T |
8383284 |
tacgacaataagtttaccatcactgaagatactgctaattgacatcttcggttatgtggaagtgcctatggtgaatgcacttctatgtggctgcccaaac |
8383185 |
T |
|
| Q |
1016 |
atcgaagctttggaccttaactttttatctgatagcttggagaatgtttgcctcccagcttccttg |
1081 |
Q |
| |
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||||||| | | || ||||| |||||| | |||||||||| ||||||||||| ||| || ||||| |
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| T |
8383184 |
atcgaagttctagatcttaaatttttaaccaatagcttggacaatgtttgccttccacctaccttg |
8383119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 840 - 1081
Target Start/End: Complemental strand, 8367361 - 8367120
Alignment:
| Q |
840 |
gttatgaaatgtgatataacattatttgtttgttcctcagtatttgtggtggaattcatctagacgtgcaaagcactacaccaataagtttaccattgct |
939 |
Q |
| |
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|||||||||| | |||||| || ||||||||||| | ||||||| || ||| |||||||||| || | |||||| |||| ||||||||||||||| || |
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| T |
8367361 |
gttatgaaatttcatataatataatttgtttgttacacagtattcgtagtgaaattcatctaaacattcaaagctctacgacaataagtttaccatcact |
8367262 |
T |
|
| Q |
940 |
gaagatgctgctaattgatgtcctctgtaacatggaagtggcttttgtaaatgcactcctctatggctgcccaaacatcgaagctttggaccttaacttt |
1039 |
Q |
| |
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|||||| ||||||||||| || || || | || || | || | || |||||||| || | |||||||||||||||||||||| | || ||||| ||| |
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| T |
8367261 |
gaagatactgctaattgacatcttcggttatgtgcaaatccctatggtgaatgcacttctatgtggctgcccaaacatcgaagctctagatcttaaattt |
8367162 |
T |
|
| Q |
1040 |
ttatctgatagcttggagaatgtttgcctcccagcttccttg |
1081 |
Q |
| |
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|| | |||||||||| ||||||| ||| ||| || ||||| |
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| T |
8367161 |
ctaaccaatagcttggacaatgttttccttccacctaccttg |
8367120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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