View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11853_low_11 (Length: 639)
Name: NF11853_low_11
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_11 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Complemental strand, 41388433 - 41388082
Alignment:
| Q |
16 |
catcaggaagctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcac |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388433 |
catcaggaagctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcac |
41388334 |
T |
|
| Q |
116 |
atctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388333 |
atctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatca |
41388234 |
T |
|
| Q |
216 |
agacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacctccacatattaata |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41388233 |
agacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacctgcacatattaata |
41388134 |
T |
|
| Q |
316 |
taaagttttcaatcagaatttaatcataaaatagccatagatattgaaccaa |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388133 |
taaagttttcaatcagaatttaatcataaaatagccatagatattgaaccaa |
41388082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 397 - 623
Target Start/End: Complemental strand, 41388043 - 41387818
Alignment:
| Q |
397 |
ccctgtgaacttaactagacttcttaactcacattcaatatctgctccatatatcccactagcaaactgaaccttccaatgcatgcttaatttttacaga |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41388043 |
ccctgtgaacttaactagacttcttaactcacattcaatatctgctccatatatcc-actagcaaactgaaccttgcaatgcatgcttaatttttacaga |
41387945 |
T |
|
| Q |
497 |
ccagtataaaataacatagaatgtaaactagactagatgcgagacattagctttcttaaatcgggaaatgactaaccggttgttcgaccactggcataga |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41387944 |
ccagtataaaataacatagaatgtaaactagactagatgcgagacattagctttcttaaatcgggaaatgactaaccggttgttcgaccactggcataga |
41387845 |
T |
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| Q |
597 |
gcgatagaacggtctgaatagcaacat |
623 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
41387844 |
gcgatagaacggcctgaatagcaacat |
41387818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 68469 - 68183
Alignment:
| Q |
16 |
catcaggaagctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcac |
115 |
Q |
| |
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||||||| | ||||||||||||||||||||| || || || || || ||||| | |||||| ||| ||||||| ||||| || || || ||||||||||| |
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| T |
68469 |
catcaggtaactcatagctcttctcaacagctgagctcgtcttcgaggtttctaactcttgttcataatcaagagcaatgtaggatagtttttccttcac |
68370 |
T |
|
| Q |
116 |
atctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatca |
215 |
Q |
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||||| || ||||||||||||||||| || |||||||| || ||||||||||| | ||||||||| | ||| || ||||| ||||| ||||| | ||| |
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| T |
68369 |
gtctctcacgatttcacgctcggctgttgtggtgaaagagtatccacgctcggttaagattttcatgagggcgtctgtgagatcacgacctgcaagatcc |
68270 |
T |
|
| Q |
216 |
agacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacct |
302 |
Q |
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| ||| ||||| || |||||||||||||||||||| ||||| || || ||||||||||||||||||||||| || |||||||||||| |
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| T |
68269 |
aaacgcaggattgcgtgtggaagggcatatccttcatagataggaactgtgtggctgacaccatctccagaatcaagaacaatacct |
68183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 59339 - 59625
Alignment:
| Q |
16 |
catcaggaagctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcac |
115 |
Q |
| |
|
||||||| | ||||||||||||||| || ||||| || || || || || || |||||||||||| | ||||||||||| |||| |||||||||||||| |
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| T |
59339 |
catcaggcaactcatagctcttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttcat |
59438 |
T |
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| Q |
116 |
atctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatca |
215 |
Q |
| |
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||| || |||||||||||||| |||| ||| || |||||||||||||| || || || |||||||||| | |||||| |||||||| || || |||||| |
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| T |
59439 |
atccctcacaatttcacgctctgctgaggtggtaaaagaataaccacgttctgtcagaattttcatcatgtaatcagtcaggtcacgaccagccaaatca |
59538 |
T |
|
| Q |
216 |
agacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacct |
302 |
Q |
| |
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||||||||||| || ||||| |||||||| || |||||||| || || ||||||||||||||||| ||||| |||| ||||||||| |
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| T |
59539 |
agacgaaggatggcgtgtgggagggcataaccctcgtagatagggactgtgtggctgacaccatcaccagaatccaacacaatacct |
59625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 37050520 - 37050806
Alignment:
| Q |
16 |
catcaggaagctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcac |
115 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| || || ||||| | |||||| | ||| ||||| ||||||| |||||||||| || || ||||||| |
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| T |
37050520 |
catcaggtagctcataggtcttctcaacagctgagctagttttagcagtttccaactcctgctcgtaatcaagagcaatataagccaatttctccttcat |
37050619 |
T |
|
| Q |
116 |
atctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatca |
215 |
Q |
| |
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||| ||||||||||| ||||| |||| || ||||||| || ||||||||||| | || |||||||| ||||||||||| ||||| ||||| | ||| |
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| T |
37050620 |
atcccttacaatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatcc |
37050719 |
T |
|
| Q |
216 |
agacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacct |
302 |
Q |
| |
|
| ||||||||| ||||||||||| |||||||| ||||| || || || |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
37050720 |
aaacgaaggattgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaatacct |
37050806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 69 - 302
Target Start/End: Complemental strand, 8689801 - 8689568
Alignment:
| Q |
69 |
agctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcgg |
168 |
Q |
| |
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|||||||||||| | ||||||||||| || || |||||||| ||||| || | |||||||| ||||| |||| ||| || |||||||||||||| || | |
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| T |
8689801 |
agctcttgctcatagtcaagggcaatgtatgaaagcttttctttcacgtcacgaacaatttctcgctctgctgaggtggtaaaagaataaccacgttcag |
8689702 |
T |
|
| Q |
169 |
taaggattttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtg |
268 |
Q |
| |
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| | || ||||||||| ||| || |||||||| || || | ||||||||||||||| ||||||||||||||||| || |||||||| || |||||||| |
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| T |
8689701 |
tcaaaatcttcatcaagaaatcggtaaggtcacgaccagccagatcaagacgaaggatggcatgtggaagggcataaccctcgtagatggggacagtgtg |
8689602 |
T |
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| Q |
269 |
gctgacaccatctccagagtccagaacaatacct |
302 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||||| |
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| T |
8689601 |
gctgacaccatcaccagaatccaacacaatacct |
8689568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 623
Target Start/End: Complemental strand, 8689070 - 8689009
Alignment:
| Q |
562 |
aaatgactaaccggttgttcgaccactggcatagagcgatagaacggtctgaatagcaacat |
623 |
Q |
| |
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|||||||| |||||| || ||||||||||| || || || ||||||| |||||||||||||| |
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|
| T |
8689070 |
aaatgacttaccggtggtacgaccactggcgtacagtgaaagaacggcctgaatagcaacat |
8689009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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