View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11853_low_14 (Length: 614)
Name: NF11853_low_14
Description: NF11853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11853_low_14 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
| [»] scaffold0149 (1 HSPs) |
| | |
|
| [»] scaffold0077 (3 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 263 - 595
Target Start/End: Original strand, 41934616 - 41934948
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttata |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41934616 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttata |
41934715 |
T |
|
| Q |
363 |
gcctttttcacatacaatttagtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaat |
462 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41934716 |
gcctttttcacgtacaatttagtctttccgattaacgactaatacaagtcatctgtatcaaataaaatgcagggaaatgagacatgcttctgattctaat |
41934815 |
T |
|
| Q |
463 |
ttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaatgcttctgattttatga |
562 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
41934816 |
ttcatgtttggccttcccatcaaattccatcaatgacgacaaataaaatattagtgatgataaaagtacaatgttattattaatgcttctgaatttatga |
41934915 |
T |
|
| Q |
563 |
tgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
41934916 |
tgttgaatatgatttcaaatatagttttcattt |
41934948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 263 - 589
Target Start/End: Original strand, 17102023 - 17102349
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttata |
362 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17102023 |
ttttcaaaagacaagaaattatcgataaagtggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttata |
17102122 |
T |
|
| Q |
363 |
gcctttttcacatacaatttagtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaat |
462 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
17102123 |
tcctttttcatgtacaatttagtctttccgattaacgactaatacaggtcatctgtataaaataaaatgcagggaaatgagacaagcttctgaaactaat |
17102222 |
T |
|
| Q |
463 |
ttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaatgcttctgattttatga |
562 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17102223 |
ttcatgtttggccttcccatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattattattaatgcttctgattttatga |
17102322 |
T |
|
| Q |
563 |
tgttgaatatgatttcaaatatagttt |
589 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17102323 |
tgttgaatatgatttcaaatatagttt |
17102349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 284 - 595
Target Start/End: Original strand, 22291119 - 22291431
Alignment:
| Q |
284 |
tcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttatagcctttttcacatacaattta |
383 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| | ||||||||| |
|
|
| T |
22291119 |
tcgataaagggatgtacgaagaattagctgcaattcttaaaaggtaatcaactatttaaattttgaatgatattttatagcctttttaatgtacaattta |
22291218 |
T |
|
| Q |
384 |
gtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaatttcatgtttggccttcctatc |
483 |
Q |
| |
|
||||| || ||||||| ||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||| ||| ||| |||||||||||||| ||| |
|
|
| T |
22291219 |
ttcttttcggttaacgactaataaaagtcatctgtatcaaatgaaatgcagggaaaggagacatgcttctgatgctacttttatgtttggccttcc-atc |
22291317 |
T |
|
| Q |
484 |
aaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaat--gcttctgattttatgatgttgaatatgatttcaaa |
581 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22291318 |
aaattccaccaatgacgacaaatgaaatattattgatgataaaagtacaatattattattaatgcgcttctgattttatgatgttgaatatgatttcaaa |
22291417 |
T |
|
| Q |
582 |
tatagttttcattt |
595 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22291418 |
tatagttttcattt |
22291431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 423 - 595
Target Start/End: Complemental strand, 22291119 - 22290947
Alignment:
| Q |
423 |
aataaaatgcagggaaatgagacatgcttctgattctaatttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatga |
522 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22291119 |
aataaaatgcagggaaatgagacatacttctgattctaatttcatgtttggccttcccatcaaattccatcaatgacgacaaatgaaatattagtgatga |
22291020 |
T |
|
| Q |
523 |
taaaagtacaatattataattaatgcttctgattttatgatgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22291019 |
taaaagtacaatgttattattaatgcttctgaatttatgatgttgaatatgatttcaaatataattttcattt |
22290947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 423 - 595
Target Start/End: Original strand, 23094138 - 23094310
Alignment:
| Q |
423 |
aataaaatgcagggaaatgagacatgcttctgattctaatttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatga |
522 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23094138 |
aataaaatgcagggaaatgagacatacttctgattctaatttcatgtttggccttcccatcaaattccatcaatgacgacaaatgaaatattagtgatga |
23094237 |
T |
|
| Q |
523 |
taaaagtacaatattataattaatgcttctgattttatgatgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23094238 |
taaaagtacaatgttattattaatgcttctgaatttatgatgttgaatatgatttcaaatataattttcattt |
23094310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 284 - 459
Target Start/End: Complemental strand, 23094138 - 23093963
Alignment:
| Q |
284 |
tcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttatagcctttttcacatacaattta |
383 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
23094138 |
tcgataaagggatgtacgaagaattagctgcaattcttaaaaggtaatcaactatttaaattttaaatgatattttatagccttttttatgtacaattta |
23094039 |
T |
|
| Q |
384 |
gtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattct |
459 |
Q |
| |
|
||||| || ||||||| ||||| ||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
23094038 |
ttcttttcggttaacgactaataaaagtcatctgtatcaaatgaaatgcagggaaaggagacatgcttctgattct |
23093963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 469
Target Start/End: Complemental strand, 16799113 - 16799055
Alignment:
| Q |
411 |
tcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaatttcatgt |
469 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
16799113 |
tcatctgtatcaaataaaatgcaaggaaatgagacatgcttctaaaactaatttcatgt |
16799055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 263 - 595
Target Start/End: Complemental strand, 163826 - 163495
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttata |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
163826 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactctttaaattttaaatgatgttttatt |
163727 |
T |
|
| Q |
363 |
gcctttttcacatacaatttagtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaat |
462 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||| | ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
163726 |
gcctttttcacgtacaatttattcttttcgattaggaactaataaaagtcatctgtatcaaataaaatgcaggaaaatgagacatgcttctgattctact |
163627 |
T |
|
| Q |
463 |
ttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaatgcttctgattttatga |
562 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
163626 |
ttcatgtttgaccttcc-atcaaattccaccaatgacgacaaataaaatattattgatgataaaagtacaatattattattaatgcttctgattttatga |
163528 |
T |
|
| Q |
563 |
tgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
163527 |
tgttgaatatgatttcaaatatagttttcattt |
163495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 263 - 595
Target Start/End: Complemental strand, 171941 - 171610
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttata |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
171941 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactctttaaattttaaatgatgttttatt |
171842 |
T |
|
| Q |
363 |
gcctttttcacatacaatttagtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaat |
462 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||| | ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
171841 |
gcctttttcacgtacaatttattcttttcgattaggaactaataaaagtcatctgtatcaaataaaatgcaggaaaatgagacatgcttctgattctact |
171742 |
T |
|
| Q |
463 |
ttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaatgcttctgattttatga |
562 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
171741 |
ttcatgtttgaccttcc-atcaaattccaccaatgacgacaaataaaatattattgatgataaaagtacaatattattattaatgcttctgattttatga |
171643 |
T |
|
| Q |
563 |
tgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
171642 |
tgttgaatatgatttcaaatatagttttcattt |
171610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0149 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: scaffold0149
Description:
Target: scaffold0149; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 263 - 595
Target Start/End: Original strand, 19633 - 19964
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttata |
362 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
19633 |
ttttcgaacgacaaaaaattatcgataaaggggtgtacgaagaatttgctgcaattcttaaaaggtaatcaactatttaaattttaaatgatattttata |
19732 |
T |
|
| Q |
363 |
gcctttttcacatacaatttagtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaat |
462 |
Q |
| |
|
|||||||||| |||||| || ||||| || ||||||| ||||| ||||||||||| |||||| ||||| |||||||||||| ||||||||||||||| | |
|
|
| T |
19733 |
gcctttttcatgtacaatatattcttttcggttaacgactaataaaagtcatctgtatcaaatgaaatgtagggaaatgagatatgcttctgattctact |
19832 |
T |
|
| Q |
463 |
ttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaatgcttctgattttatga |
562 |
Q |
| |
|
|| |||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19833 |
tttatgtttggccttcc-atcaaattctaccaatgacgacaaatgaaatattattgatgataaaagtacaatattattattaatgcttctgattttatga |
19931 |
T |
|
| Q |
563 |
tgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
19932 |
tgttgaatatgatttcaaatatagttttcattt |
19964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 263 - 595
Target Start/End: Original strand, 51933 - 52265
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaa-tgatgttttat |
361 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |||| |||||| |
|
|
| T |
51933 |
ttttcgaacgacaagaaattatcgataaaggggtgtacgaagaattaactgcaattcttaaaaggtaatcaactatttaaattataaaatgatattttat |
52032 |
T |
|
| Q |
362 |
agcctttttcacatacaatttagtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaa |
461 |
Q |
| |
|
|||||||||||| ||||||||| ||||| || ||||||| ||||| ||||||||||| |||||| |||| ||||||||| |||||||||||||||||| |
|
|
| T |
52033 |
agcctttttcacgtacaatttattcttttcggttaacgactaataaaagtcatctgtatcaaatgaaatacagggaaattggacatgcttctgattctac |
52132 |
T |
|
| Q |
462 |
tttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaatgcttctgattttatg |
561 |
Q |
| |
|
||| |||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
52133 |
ttttatgtttggccttcc-atcaaattccaccaatgacgacaaatgaaatataattgatgataaaagtacaatattattattaatgcttctgattttatg |
52231 |
T |
|
| Q |
562 |
atgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
52232 |
atgttgaatatgatttcaaatatagttttcattt |
52265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 263 - 595
Target Start/End: Complemental strand, 40988 - 40657
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttata |
362 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
40988 |
ttttcgaacgacaagaaattatcgataaaggggtgtacgaagaattacctgtaattcttaaaaggtaatcaactatttaaattttaaataatattttata |
40889 |
T |
|
| Q |
363 |
gcctttttcacatacaatttagtctttccgattaacgattaatacaagtcatctgtgtcaaataaaatgcagggaaatgagacatgcttctgattctaat |
462 |
Q |
| |
|
||||||||||| ||||||||| ||||| || ||||||| ||||| ||||||||| | |||||| ||||||||||||||| ||||||||| |||||||| | |
|
|
| T |
40888 |
gcctttttcacgtacaatttattcttttcggttaacgactaataaaagtcatctatatcaaatcaaatgcagggaaatgggacatgcttttgattctact |
40789 |
T |
|
| Q |
463 |
ttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaatgcttctgattttatga |
562 |
Q |
| |
|
|| ||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
40788 |
tttatgtttgtccttcc-atcaaattccaccaatgacgacaaatgaaatattatggatgataaaagtacaatattattattaatgcttccgattttatga |
40690 |
T |
|
| Q |
563 |
tgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
40689 |
tgttgaatatgatttcaaatatagttttcattt |
40657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 263 - 389
Target Start/End: Complemental strand, 42118 - 41991
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggtaatcaactttttaaatt-ttaaatgatgttttat |
361 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||| |||||| |
|
|
| T |
42118 |
ttttcgaacgacaagaaattatcgataaaggggtgtacgaagaattaactgcaattcttaaaaggtaatcaactatttaaattataaaatgatattttat |
42019 |
T |
|
| Q |
362 |
agcctttttcacatacaatttagtcttt |
389 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |
|
|
| T |
42018 |
agcctttttcacgtacaatttattcttt |
41991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 327 - 595
Target Start/End: Original strand, 19455653 - 19455921
Alignment:
| Q |
327 |
gtaatcaactttttaaattttaaatgatgttttatagcctttttcacatacaatttagtctttccgattaacgattaatacaagtcatctgtgtcaaata |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||| ||||||||||| ||||||| |
|
|
| T |
19455653 |
gtaatcaactttttaaattttaaatgatgttttagagcctttttcacgtacaatttagtctttccgattaataactaatgaaagtcatctgtatcaaata |
19455752 |
T |
|
| Q |
427 |
aaatgcagggaaatgagacatgcttctgattctaatttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaa |
526 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19455753 |
aaatgtagggaaatgagacatgcttcttattctaatttcatgtttggccttcccatcaaattccaccaatgacgacaaatgaaatattagtgatgataaa |
19455852 |
T |
|
| Q |
527 |
agtacaatattataattaatgcttctgattttatgatgttgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19455853 |
agtacaatattattattaatgctactgattgtatgatgttgaatatgatttcaaatatagttctcattt |
19455921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 19455328 - 19455394
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaattcttaaaaggta |
329 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19455328 |
ttttcgaaagacaagaaattttcgataaaggggtgtacgaagaattagctgtaattcttaaaaggta |
19455394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 466 - 595
Target Start/End: Complemental strand, 103093 - 102965
Alignment:
| Q |
466 |
atgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaagtacaatattataattaatgcttctgattttatgatgt |
565 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
103093 |
atgtttggccttcc-atcaaattccactaatgacgacaaatgaaatattattgatgataaaagtacaatattattattaatgcttctgattttatgatgt |
102995 |
T |
|
| Q |
566 |
tgaatatgatttcaaatatagttttcattt |
595 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
102994 |
tgaatatgatttcaaatatagtgttcattt |
102965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 429 - 577
Target Start/End: Original strand, 45536848 - 45537002
Alignment:
| Q |
429 |
atgcagggaaatgagacatgcttctgattctaatttcatgtttggccttcctatcaaattccatcaatgacgacaaatgaaatattagtgatgataaaag |
528 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
45536848 |
atgcagggaaatgagacatgcttatgattctgatttcatgtttggccttcccatcaagcgccatcaatgatgacaaatgaaatattagtgatgatagaag |
45536947 |
T |
|
| Q |
529 |
tacaatattataattaatgc------ttctgattttatgatgttgaatatgattt |
577 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
45536948 |
tccaatattagtattaatgcttatgattctgattttatgttgttgaatatgattt |
45537002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 48305183 - 48305128
Alignment:
| Q |
263 |
ttttcgaaagacaagaaattatcgataaaggggtgtacgaagaattagctgcaatt |
318 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||||||||| | |||||| |
|
|
| T |
48305183 |
ttttcgaaagacaacaaattatcaataaaggtgtgtacgaagaattaaccgcaatt |
48305128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 370
Target Start/End: Original strand, 22155542 - 22155610
Alignment:
| Q |
301 |
gaagaattagctgcaattcttaaaaggtaatcaactttttaaattttaaatgatgttttatagccttttt |
370 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| |||| | | |||||||||||| ||||||||| ||||| |
|
|
| T |
22155542 |
gaagaattagctgcaatttttaaacggtaattaactatat-tattttaaatgatattttatagctttttt |
22155610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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